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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactaactacttagttagtattttgattgaagaatgcatgtgatatgtcgtccttttgagtgtgttgaatccttttccttaattcttcgtaatgatgctttagGTGCACAGAGCTGTTACTAAAGATGGATTAGAAGTTGCAATGAAGATTCAGTACCCTGGCGTTGCCAACAGCATTGAAAGTGATATTGAAAATGTCAGAC

Basic information

species Arabidopsis thaliana
transcript AT4G01660.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G01660.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv07s0005g02430.t01 (Vitis vinifera), 3'ss of exon 3
gtactaactact-tagttagtattttgattgaagaatgcatgtgatatgtcgtccttttgagtgt-gttgaatccttttccttaattcttcgtaatgatgctttagGTGCACAGAGCTGTTACTAAAGATGGATTAGAAGTTGCAATGAAGATTCAGTACCCTGGCGTTGCCAACAGCATTGAAAGTGATATTGAAAATGTCAGAC
        |  | ||  ||   |||    |  |||    ||||  | | | ||| ||| |  |||  |||  |   |  ||| |    |     |  ||| || ||||||||| |||||| || |||||||| || || ||||| ||||| ||||||||||| || |||||  | |||||||||||||||||||||||||||| ||
-----ggttgttataagtaccgtttctcatccagatgcaatgtactcttttgtcatttagcttgttattgcttatctagcctcacagttctaacacaatg-ttcagGTGCACAAAGCTGTAACAAAAGATGGTTTGGAGGTTGCGATGAAAATTCAGTACCCAGGTGTTGCAGATAGCATTGAAAGTGATATTGAAAATGTCAAAC

upper sequence: AT4G01660.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: PP1S14_106V6.1 (Physcomitrella patens), 3'ss of exon 4
-----gtactaactacttagttagtattttga---ttgaagaatgcatgtgatatgtcgtccttttgagtgtgttgaatccttttccttaattcttcgtaatgatgctttagGTGCACAGAGCTGTTACTAAAGATGGATTAGAAGTTGCAATGAAGATTCAGTACCCTGGCGTTGCCAACAGCATTGAAAGTGATATTGAAAATGTCAGAC
     || |||  |  | |   ||  |    |   ||||     ||| || || |  | |||||   |   |||        |   || || |    |   ||  |    |||| || |||||| |    || |||||    |  |||||||||||||||||||| || ||||| || ||||||||||| || ||||||||||||||||| |
ttgcagtgctatttcttaatacaggttcaccacctttgattttcgcaagttatgttccatccttaaaaaattgtga------tgatctaaact----gcgctg--gtcacagGTACATAGAGCTATATTGAAGGATGGGACTGTGGTTGCAATGAAGATTCAGTATCCAGGCGTGGCTAACAGCATTGACAGCGATATTGAAAATGTCAGGC

upper sequence: AT4G01660.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: EFJ12241 (Selaginella moellendorffii), 3'ss of exon 3
gtactaactacttagttagtattttgattgaagaatgcatgtgatatgtcgtccttttgagtgtgttgaatccttttccttaattcttcgtaatgatgctttagGTGCACAGAGCTGTTACTAAAGATGGATTAGAAGTTGCAATGAAGATTCAGTACCCTGGCGTTGCCAACAGCATTGAAAGTGATATTGAAAATGTCAGAC
                                                         || |  | |||      ||| |||   || | |   |   || | |||| ||| ||||       ||||  ||       |  |  |||||||| || || |||||||||||||| |||||||| ||||| || || ||||||| | 
--------------------------------------------------------gtgcgactattgtcattcttttcttgtctcattgctttctcgcatcagGTCCACCGAGCAACGTTAAAAGGAGGTCAGCTGGCGGTGATGAAGATACAATATCCTGGCGTTGCCAAGAGCATTGACAGTGACATAGACAATGTCAAAT

upper sequence: AT4G01660.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: EFJ25852 (Selaginella moellendorffii), 3'ss of exon 3
gtactaactacttagttagtattttgattgaagaatgcatgtgatatgtcgtccttttgagtgtgttgaatccttttccttaattcttcgtaatgatgctttagGTGCACAGAGCTGTTACTAAAGATGGATTAGAAGTTGCAATGAAGATTCAGTACCCTGGCGTTGCCAACAGCATTGAAAGTGATATTGAAAATGTCAGAC
                                                         || |  | |||      ||| |||    | | |   |   || | |||| ||| ||||       ||||  ||       |  |  |||||||| || || |||||||||||||| |||||||| ||||| || || ||||||| | 
--------------------------------------------------------gtgcgactattgtcattcttttcttgtcccattgctttctcgcatcagGTCCACCGAGCAACGTTAAAAGGAGGTCAGCTGGCGGTGATGAAGATACAATATCCTGGCGTTGCCAAGAGCATTGACAGTGACATAGACAATGTCAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtccttttgagtgtgttgaatccttttccttaattcttcgtaatgatgctttagGTGCACAGAGCTGTTACTAAAGATGGATTAGAAGTTGCAATGAAGATTCAGTACCCTGGCGTTGCCAACAGCATTGAAAGTGATATTGAAAATGTCAGAC
                            ccttaat  putative branch site (score: 4)
                              ttaattctt  TA-rich tract