Sequence
atgc intronic sequence ATGC exonic sequencegtacacttccgagagacgcctttgataactttcatttgtgaattcatctttttctatatgtgatttgtttgttgatattcccgcagATTGGCCTATCTGCATGAGGGTCTTGAACCGAAAGTCGTTCATCGGGACATAAAATCTAGTAATATTTTGCTTGATCGTCAATGGAATGCTAAGGTATCA
Basic information
| species | Arabidopsis thaliana |
| transcript | AT4G01330.1 |
| intron # | 3 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G01330.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os03g03410.1 (Oryza sativa), 3'ss of exon 3
---------gtacacttccgaga-gacgcctttgataactttcatttgtgaattc-atctttttctatatgtgatttgtttgttgatatt---cccgcagATTGGCCTATCTGCATGAGGGTCTTGAACCGAAAGTCGTTCATCGGGACATAAAATCTAGTAATATTTTGCTTGATCGTCAATGGAATGCTAAGGTATCA
|| | | | | || | | ||| | || || || | ||| || | | | || |||||||||| |||||||| || |||||||| || || ||||| ||||| |||||||| ||||| | ||||| | |||||||||||||| || |||
atattgtcagtggcttgcttaaacaacatcaacagttcttttaaaagatgggtttgatagggaaacacatgaatactgacacccaacttctgctctctagGCTGGCCTATCTTCATGAGGGGCTGGAACCGAAGGTTGTCCATCGTGACATCAAATCTAGCAATATCCTTCTTGACCAGCAATGGAATGCTAAAGTGTCA
upper sequence: AT4G01330.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA09G39160.1 (Glycine max), 3'ss of exon 3
gtac-acttccgagagacgcctttgataactttcatttgtga----attcatctttttctatatgtgatttgtttgttgatattcccgcagATTGGCCTATCTGCATGAGGGTCTTGAACCGAAAGTCGTTCATCGGGACATAAAATCTAGTAATATTTTGCTTGATCGTCAATGGAATGCTAAGGTATCA
|||| | | || ||| | | || | ||| | | ||| ||| || | |||||| || || | |||||||||||||| ||||||||||||||||||||||| || || || || | ||||| ||||| || | ||||||| |||||||| | ||||| ||
gtaccgtatttgtgattaatcttcatacattaaaatctctgatgatgcttgattgttttgataactgtgctttttgtttatcttttc--agATTGGCCTATCTTCATGAGGGTCTTGAACCGAAAGTTGTCCACCGAGATGTGAAATCAAGTAACATACTTATTGATCGCCAATGGAACTCCAAGGTTTCC
upper sequence: AT4G01330.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA18G47170.1 (Glycine max), 3'ss of exon 3
gtac-acttccgagagacgcctttgataactttcatttgtga----attcatctttttctatatgtgatttgtttgttgatattcccgcagATTGGCCTATCTGCATGAGGGTCTTGAACCGAAAGTCGTTCATCGGGACATAAAATCTAGTAATATTTTGCTTGATCGTCAATGGAATGCTAAGGTATCA-
||| | | || ||| | | || | ||| | | ||| || || | |||||| | || | |||||||||||||| ||||||||||||||||| ||||| || || || || | ||||| ||||| || | ||||||| |||||||| | ||||| ||
-taccgtatttgtgattaatcttcatacagtggaatctatgatgatgcttgattgttttgatcactgtactttttgtttgtcttttc--agaTTGGCCTATCTTCATGAGGGTCTTGAACCAAAAGTTGTCCACCGAGATGTGAAATCAAGTAACATACTCATTGATCGCCAATGGAACTCCAAGGTTTCTG
upper sequence: AT4G01330.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv15s0046g02030.t01 (Vitis vinifera), 3'ss of exon 3
----gtacact--tccgagagac---gcctttgataactttcatttgtgaatt--------catctttttctatatgtgatttgtttgttgatattcccgcagATTGGCCTATCTGCATGAGGGTCTTGAACCGAAAGTCGTTCATCGGGACATAAAATCTAGTAATATTTTGCTTGATCGTCAATGGAATGCTAAGGTATCA
||| || || || | || | |||||| | || || || ||||| ||||| |||| | || | || | | |||||||||||||| ||||||||||||||||| || || || ||||| || |||||||||| || || | |||||||| |||||||| ||||||| ||
gtacctaccctagtctgatatactgaaaactatccaacttttgcccgaaaacattgcttggcaggttgttcta-atgtgctttgct-atttttgttgctgtagATTGGCCTATCTTCATGAGGGTCTTGAACCAAAGGTTGTCCATCGAGATGTAAAATCTAGCAACATACTACTTGATCGCCAATGGAACTCTAAGGTGTCTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124818193|gb|EH903059.1|EH903059EST: CCGTTGACTTGGGATATTCGTATGAACATAATACTTTGCATGGCGAAAGG ATTGGCCTATCTGCATGAGGGTCTTGAACCGAAAGTCGTTCATCGG
genomic: CCGTTGACTTGGGATATTCGTATGAACATAATACTTTGCATGGCGAAAGGgtacacttcc ... attcccgcagATTGGCCTATCTGCATGAGGGTCTTGAACCGAAAGTCGTTCATCGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcatttgtgaattcatctttttctatatgtgatttgtttgttgatattcccgcagATTGGCCTATCTGCATGAGGGTCTTGAACCGAAAGTCGTTCATCGGGACATAAAATCTAGTAATATTTTGCTTGATCGTCAATGGAATGCTAAGGTATCA
tgttgat putative branch site (score: 4)
tattccc CT-rich tract
atctttttctatat TA-rich tract
