1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aagtctgcttgtctagtgaacatgaaaagaaggtcttttcgaaaaattctggaatttgggtgtattatagttgatttggaactgtgtattttgttaggagAGCCTGGAAGGCGTTCTGGTATGCCATCTCGGAGGTCTTGGCAAGCACCTGAGCATGATGGACTTCTTGGGAAAGGTTCTTTCCCTAAGCCTTCTGGATT
species | Arabidopsis thaliana |
transcript | AT4G01290.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGTGGATGGAATGATAAAGATAGTGATTCACAGTCAGACCGGGACTCAG GEST: gi|86067668|gb|DR363425.1|DR363425
genomic: TGGTGGATGGAATGATAAAGATAGTGATTCACAGTCAGACCGGGACTCAGgtagccggag ... ttgttaggag-
EST: TGGTGGATGGAATGATAAAGATAGTGATTCACAGTCAGACCGGGACTCAG G
genomic: TGGTGGATGGAATGATAAAGATAGTGATTCACAGTCAGACCGGGACTCAGgtagccggag ... ttgttaggag-
attctggaatttgggtgtattatagttgatttggaactgtgtattttgttaggagAGCCTGGAAGGCGTTCTGGTATGCCATCTCGGAGGTCTTGGCAAGCACCTGAGCATGATGGACTTCTTGGGAAAGGTTCTTTCCCTAAGCCTTCTGGATT
agttgat putative branch site (score: 5)
ttttgtt putative PPT
tattatagttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtctgcttgtctagtgaacatgaaaagaaggtcttttcgaaaaattctggaatttgggtgtattatagttgatttggaactgtgtattttgttaggagAGCCTGGAAGGCGTTCTGGTATGCCATCTCGGAGGTCTTGGCAAGCACCTGAGCATGATGGACTTCTTGGGAAAGGTTCTTTCCCTAAGCCTTCTGGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - aaaagaa
- - - - - - - - - - - - - - - - - - - - gaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - aatttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatttgg