1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atgaagtctgcttgtctagtgaacatgaaaagaaggtcttttcgaaaaattctggaatttgggtgtattatagttgatttggaactgtgtattttgttagGAGAGCCTGGAAGGCGTTCTGGTATGCCATCTCGGAGGTCTTGGCAAGCACCTGAGCATGATGGACTTCTTGGGAAAGGTTCTTTCCCTAAGCCTTCTGG
species | Arabidopsis thaliana |
transcript | AT4G01290.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGTGGATGGAATGATAAAGATAGTGATTCACAGTCAGACCGGGACTCAG GAGAGCCTGGAAGGCGTTCTGGTATGCCATCTCGGAGGTCTTGGCAAGCACEST: gi|125091001|gb|EL148824.1|EL148824
genomic: TGGTGGATGGAATGATAAAGATAGTGATTCACAGTCAGACCGGGACTCAGgtagccggag ... attttgttagGAGAGCCTGGAAGGCGTTCTGGTATGCCATCTCGGAGGTCTTGGCAAGCAC
EST: AGTCAGACCGGGACTCAG GAGAGCCTGGAAGGCGTTCTGGTATGCCATCTCGGAGGTCTTGGCAAGCAC
genomic: AGTCAGACCGGGACTCAGgtagccggag ... attttgttagGAGAGCCTGGAAGGCGTTCTGGTATGCCATCTCGGAGGTCTTGGCAAGCAC
aaaattctggaatttgggtgtattatagttgatttggaactgtgtattttgttagGAGAGCCTGGAAGGCGTTCTGGTATGCCATCTCGGAGGTCTTGGCAAGCACCTGAGCATGATGGACTTCTTGGGAAAGGTTCTTTCCCTAAGCCTTCTGG
agttgat putative branch site (score: 5)
ttttgtt putative PPT
tattatagttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgaagtctgcttgtctagtgaacatgaaaagaaggtcttttcgaaaaattctggaatttgggtgtattatagttgatttggaactgtgtattttgttagGAGAGCCTGGAAGGCGTTCTGGTATGCCATCTCGGAGGTCTTGGCAAGCACCTGAGCATGATGGACTTCTTGGGAAAGGTTCTTTCCCTAAGCCTTCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - -aaaagaa
- - - - - - - - - - - - - - - - - - - - - -gaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aatttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatttgg