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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccaatgcgatccttgtgttaatttttttgtttttttttgcgtctttaactgagttttattgcttacagttttccattttctgtagCTTATTTTCAGCGCGGTCATCCGATATACTCTTCACATTATGTTCGTTTCCGGTTGGGTCACGAAAAGGACAATTCACCTCACTACAACAATTCACAGGA

Basic information

species Arabidopsis thaliana
transcript AT4G00755.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19875768|gb|AU236599.1|AU236599
EST:     GATTGGTGATTTGTGTCTCATTACTGAAGTCAGCATCCATCCTTTCCAAG                         CTTATTTTCAGCGCGGTCATCCGATATACTCTTCACATTATGTTCGTTTCC
genomic: GATTGGTGATTTGTGTCTCATTACTGAAGTCAGCATCCATCCTTTCCAAGgtaccaatgc ... ttttctgtagCTTATTTTCAGCGCGGTCATCCGATATACTCTTCACATTATGTTCGTTTCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttttgcgtctttaactgagttttattgcttacagttttccattttctgtagCTTATTTTCAGCGCGGTCATCCGATATACTCTTCACATTATGTTCGTTTCCGGTTGGGTCACGAAAAGGACAATTCACCTCACTACAACAATTCACAGGA
                             tgcttac  putative branch site (score: 2)
                                      ttttccattttctgt  putative PPT
                     agttttatt  TA-rich tract