1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttatcttctaacttccgacactttttgtttttttaaatcctgaaatctgttattgtgaagctattcatctttgatcttgtgacacaatcatatggtatcttgcagGGCTTGTGCTAATGGAGTATGTAAGAAAAAGAGTAGAAGATGATACTTCTCTTGCCCCAAGTGTTGTCCAAGAACTCAGCCTTTTGGATAGTTGTAACTT
species | Arabidopsis thaliana |
transcript | AT4G00695.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGAAGATCTAGTAGCTGACAAATTTGATCTTAAGATGCTCCGATCTCTCG GGCTTGTGCTAATGGAGTATGTAAGAAAAAGAGTAGAAGATGATACTTCTCEST: gi|116417755|gb|EG460347.1|EG460347
genomic: CGAAGATCTAGTAGCTGACAAATTTGATCTTAAGATGCTCCGATCTCTCGgttatcttct ... tatcttgcagGGCTTGTGCTAATGGAGTATGTAAGAAAAAGAGTAGAAGATGATACTTCTC
EST: CGAAGATCTAGTAGCTGACAAATTTGATCTTAAGATGCTCCGATCTCTCG GGCTTGTGCTAATGGAGTATGTAAGAAAAAGAGTAGAAGATGATACTTCTCEST: gi|116417773|gb|EG460365.1|EG460365
genomic: CGAAGATCTAGTAGCTGACAAATTTGATCTTAAGATGCTCCGATCTCTCGgttatcttct ... tatcttgcagGGCTTGTGCTAATGGAGTATGTAAGAAAAAGAGTAGAAGATGATACTTCTC
EST: CGAAGATCTAGTAGCTGACAAATTTGATCTTAAGATGCTCCGATCTCTCG GGCTTGTGCTAATGGAGTATGTAAGAAAAAGAGTAGAAGATGATACTTCTCEST: gi|116417760|gb|EG460352.1|EG460352
genomic: CGAAGATCTAGTAGCTGACAAATTTGATCTTAAGATGCTCCGATCTCTCGgttatcttct ... tatcttgcagGGCTTGTGCTAATGGAGTATGTAAGAAAAAGAGTAGAAGATGATACTTCTC
EST: CGAAGATCTAGTAGCTGACAAATTTGATCTTAAGATGCTCCGATCTCTCG GGCTTGTGCTAATGGAGTATGTAAGAAAAAGAGTAGAAGATGATACTTCTCEST: gi|116417758|gb|EG460350.1|EG460350
genomic: CGAAGATCTAGTAGCTGACAAATTTGATCTTAAGATGCTCCGATCTCTCGgttatcttct ... tatcttgcagGGCTTGTGCTAATGGAGTATGTAAGAAAAAGAGTAGAAGATGATACTTCTC
EST: CGAAGATCTAGTAGCTGACAAATTTGATCTTAAGATGCTCCGATCTCTCG GGCTTGTGCTAATGGAGTATGTAAGAAAAAGAGTAGAAGATGATACTTCTCEST: gi|116417774|gb|EG460366.1|EG460366
genomic: CGAAGATCTAGTAGCTGACAAATTTGATCTTAAGATGCTCCGATCTCTCGgttatcttct ... tatcttgcagGGCTTGTGCTAATGGAGTATGTAAGAAAAAGAGTAGAAGATGATACTTCTC
EST: CGAAGATCTAGTAGCTGACAAATTTGATCTTAAGATGCTCCGATCTCTCG GGCTTGTGCTAATGGAGTATGTAAGAAAAAGAGTAGAAGATGATACTTCTCEST: gi|116417785|gb|EG460377.1|EG460377
genomic: CGAAGATCTAGTAGCTGACAAATTTGATCTTAAGATGCTCCGATCTCTCGgttatcttct ... tatcttgcagGGCTTGTGCTAATGGAGTATGTAAGAAAAAGAGTAGAAGATGATACTTCTC
EST: CGAAGATCTAGTAGCTGACAAATTTGATCTTAAGATGCTCCGATCTCTCG GGCTTGTGCTAATGGAGTATGTAAGAAAAAGAGTAGAAGATGATACTTCTCEST: gi|116419550|gb|EG462142.1|EG462142
genomic: CGAAGATCTAGTAGCTGACAAATTTGATCTTAAGATGCTCCGATCTCTCGgttatcttct ... tatcttgcagGGCTTGTGCTAATGGAGTATGTAAGAAAAAGAGTAGAAGATGATACTTCTC
EST: CGAAGATCTAGTAGCTGACAAATTTGATCTTAAGATGCTCCGATCTCTCG GGCTTGTGCTAATGGAGTATGTAAGAAAAAGAGTAGAAGATGATACTTCTCEST: gi|116417757|gb|EG460349.1|EG460349
genomic: CGAAGATCTAGTAGCTGACAAATTTGATCTTAAGATGCTCCGATCTCTCGgttatcttct ... tatcttgcagGGCTTGTGCTAATGGAGTATGTAAGAAAAAGAGTAGAAGATGATACTTCTC
EST: CGAAGATCTAGTAGCTGACAAATTTGATCTTAAGATGCTCCGATCTCTCG GGCTTGTGCTAATGGAGTATGTAAGAAAAAGAGTAGAAGATGATACTTCTC
genomic: CGAAGATCTAGTAGCTGACAAATTTGATCTTAAGATGCTCCGATCTCTCGgttatcttct ... tatcttgcagGGCTTGTGCTAATGGAGTATGTAAGAAAAAGAGTAGAAGATGATACTTCTC
tattgtgaagctattcatctttgatcttgtgacacaatcatatggtatcttgcagGGCTTGTGCTAATGGAGTATGTAAGAAAAAGAGTAGAAGATGATACTTCTCTTGCCCCAAGTGTTGTCCAAGAACTCAGCCTTTTGGATAGTTGTAACTT
ctttgat putative branch site (score: 5)
aatcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttatcttctaacttccgacactttttgtttttttaaatcctgaaatctgttattgtgaagctattcatctttgatcttgtgacacaatcatatggtatcttgcagGGCTTGTGCTAATGGAGTATGTAAGAAAAAGAGTAGAAGATGATACTTCTCTTGCCCCAAGTGTTGTCCAAGAACTCAGCCTTTTGGATAGTTGTAACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC