Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtgtctgtgtcaagttacttctgtcttatctccataggttaggaagttagatagactaaggctactgcaccgtgtttatttataactattttttacttgtgtttgcagGCTCAGGTTCTGAGATCAGCCGGAGAGGAAAACTATCAAGAGTTCCCTTTGAAACGATATGATTTCTTCGGCCATG

Basic information

species Arabidopsis thaliana
transcript AT4G00520.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19875316|gb|AU236147.1|AU236147
EST:     TTCGTGAAAATCAAAATGTGGATGGAGTTTATTTTCTCTTGCAAGGACAG                         GCTCAGGTTCTGAGATCAGCCGGAGAGGAAAACTATCAAGAGTTCCCTTTG
genomic: TTCGTGAAAATCAAAATGTGGATGGAGTTTATTTTCTCTTGCAAGGACAGgttcgtgtct ... gtgtttgcagGCTCAGGTTCTGAGATCAGCCGGAGAGGAAAACTATCAAGAGTTCCCTTTG
EST: gi|125270714|gb|EL284799.1|EL284799
EST:     TTCGTGAAAATCAAAATGTGGATGGAGTTTATTTTCTCTTGCAAGGACAG                         GCTCAGGTTCTGAGATCAGCCGGAGAGGAAAACTATCAAGAGTTCCCTTTG
genomic: TTCGTGAAAATCAAAATGTGGATGGAGTTTATTTTCTCTTGCAAGGACAGgttcgtgtct ... gtgtttgcagGCTCAGGTTCTGAGATCAGCCGGAGAGGAAAACTATCAAGAGTTCCCTTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gactaaggctactgcaccgtgtttatttataactattttttacttgtgtttgcagGCTCAGGTTCTGAGATCAGCCGGAGAGGAAAACTATCAAGAGTTCCCTTTGAAACGATATGATTTCTTCGGCCATG
                          ttataac  putative branch site (score: 2)
                     tttatttataactatt  TA-rich tract