1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atctttgacaactaattcggcttaatcacattgtcgatacattgtctcaatgaaattcatcaaaagttgttgaataataaatttttaatgtttccaacagAATGCGGAATACGGCTGGCATCAGCGGGATATGCAGTGTTTGGGATGGACTACGAGGGGCATGGTCGGTCCAAGGGTGCTCGTTGCTATATAAAAAAATT
species | Arabidopsis thaliana |
transcript | AT3G62860.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
ctcaatgaaattcatcaaaagttgttgaataataaatttttaatgtttccaacagAATGCGGAATACGGCTGGCATCAGCGGGATATGCAGTGTTTGGGATGGACTACGAGGGGCATGGTCGGTCCAAGGGTGCTCGTTGCTATATAAAAAAATT
ttttaat putative branch site (score: 3)
tgtttcc CT-rich tract
aaattcatcaaaagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctttgacaactaattcggcttaatcacattgtcgatacattgtctcaatgaaattcatcaaaagttgttgaataataaatttttaatgtttccaacagAATGCGGAATACGGCTGGCATCAGCGGGATATGCAGTGTTTGGGATGGACTACGAGGGGCATGGTCGGTCCAAGGGTGCTCGTTGCTATATAAAAAAATT
- - - - caactaa
- - - - - - - - - - - -aatcaca
- - - - - - - - - - - - - - - - - - - - - - - - aatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -catcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaat