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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaatgtgaaaaacatcttaagctgtttgcttcagatcgttgtttcttggcttactctgtttggcttattctgcagAATGTATTGTATTCTCCAATGGGGAAGCTTCTAATTCTGCAACCATCCGAGAGATTCTCTCCCCCACACCCCCTGCTTCCTCCCGGAAGTGGTCTCTATC

Basic information

species Arabidopsis thaliana
transcript AT3G62590.1
intron # 3
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctgtttgcttcagatcgttgtttcttggcttactctgtttggcttattctgcagAATGTATTGTATTCTCCAATGGGGAAGCTTCTAATTCTGCAACCATCCGAGAGATTCTCTCCCCCACACCCCCTGCTTCCTCCCGGAAGTGGTCTCTATC
                           ggcttac  putative branch site (score: 3)
                                           cttattct  putative PPT
                                            ttattct  TA-rich tract