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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgttttgatactctttacattgtcttaacgagagcaataggcttctttcggtttcatgtgcttatacatggtttgattgaataaaccatattctcagttattggcctttttgcatgattaaagagtaagatcagcacaaaaagagtgagttatctacatttctgatcaagtatgtcacatttttcttgtggattcagGTTTTAGTCTACCATGATCTTCTGGGAATGATGCAGCATCCACATCACGCTAAG

Basic information

species Arabidopsis thaliana
transcript AT3G61530.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G61530.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv15s0046g02170.t01 (Vitis vinifera), 3'ss of exon 3
gttcgttttgatactctttacattgtcttaacgagagcaataggcttctttcggtttcatgtgcttatacatggtttgattgaataaaccatattctcagttattggcctttttgcatgattaaagagtaagatcagcacaaaaagagtgagttatctacatttctgatcaagtatgtcacatttttcttgtggattcagGTTTTAGTCTACCATGATCTTCTGGGAATGATGCAGCATCCACATCACGCTAAG
                                                                                       | |  |   ||  || |  || |  || | || |      | || |   ||||        |    |    |  | | |||   |  |  || | ||     |   |   |||||  |||| ||||||||||| |||||||||||||| || |||||||| ||||||
---------------------------------------------------------------------------------------atctgaagatc--ttgtcagcttgctttcttgctcttcttggaaaagttgcac--------tctactgatcaattctttgacacaaaacttccctttcaatatactg---cagGTGCTAGTTTACCATGATCTGCTGGGAATGATGCAACACCCACATCATGCTAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86079956|gb|DR375713.1|DR375713
EST:     TTCCAACCATTGGCATAGGAGCTGGCCCTTTCTGCAGTGGTCAG                         GTTTTAGTCTACCATGATCTTCTGGGAATGATGCAGCATCCACATCACGCT
genomic: TTCCAACCATTGGCATAGGAGCTGGCCCTTTCTGCAGTGGTCAGgttcgttttg ... gtggattcagGTTTTAGTCTACCATGATCTTCTGGGAATGATGCAGCATCCACATCACGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagtgagttatctacatttctgatcaagtatgtcacatttttcttgtggattcagGTTTTAGTCTACCATGATCTTCTGGGAATGATGCAGCATCCACATCACGCTAAG
                 ttctgat  putative branch site (score: 3)
                                     tttttcttgt  putative PPT
                                    atttttctt  TA-rich tract