1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagacattttattttatcgtcactggttttaggttttggcttttttatgttctttgcctgattttgctgactattgacatgaaacagAGCTGAGAAGAAGATTGCAGATGTTCATGCTTGGGAAAACAGCAAGAAAGCAGCTGTCGAAGCGCAACTCAAGAAAATCGAG
species | Arabidopsis thaliana |
transcript | AT3G61260.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCTTTCGTCAGAGCGGGGGAAGAAAGCGAAAAGAGCAAAGCAGAGAACAA AGCTGAGAAGAAGATTGCAGATGTTCATGCTTGGGAAAACAGEST: gi|125249652|gb|EL263737.1|EL263737
genomic: TCTTTCGTCAGAGCGTGGGAAGAAAGCGAAAAGAGCAAAGCAGAGAACAAgtaagacatt ... catgaaacagAGCTGAGAAGAAGATTGCAGATGTTCATGCTTGGGAAAACAG
EST: TCTTTCGTCAGAACGTGGGAAGAAAGCGAAAAGAGCAAAGCAGAGAACAA AGCTGAGAAGAAGATTGCAGATGTTCATGCTTGGGAAAACAGCAAGAAAEST: gi|125298484|gb|EL312569.1|EL312569
genomic: TCTTTCGTCAGAGCGTGGGAAGAAAGCGAAAAGAGCAAAGCAGAGAACAAgtaagacatt ... catgaaacagAGCTGAGAAGAAGATTGCAGATGTTCATGCTTGGGAAAACAGCAAGAAA
EST: TCTTTCGTCAGAGCGTGGGAAGAAAGCGAAAAGAGCAAAGCAGAGAACAA AGCTGAGAAGAAGATTGCAGATGTTCATGEST: gi|124740681|gb|EH831843.1|EH831843
genomic: TCTTTCGTCAGAGCGTGGGAAGAAAGCGAAAAGAGCAAAGCAGAGAACAAgtaagacatt ... catgaaacagAGCTGAGAAGAAGATTGCAGATGTTCATG
EST: TCTTTCGTCAGAGCGTGGGAAGAAAGCGAAAAGAGCAAAGCAGAGAACAA AGCTGAGAAGAAGAEST: gi|124909384|gb|EH983464.1|EH983464
genomic: TCTTTCGTCAGAGCGTGGGAAGAAAGCGAAAAGAGCAAAGCAGAGAACAAgtaagacatt ... catgaaacagAGCTGAGAAGAAGA
EST: TCTTTCGTCAGAGCGTGGGAAGAAAGCGAAAAGAGCAAAGCAGAGAACAA AGCTGAGAAGAAGATTGCAGATGTTCATGEST: gi|116446100|gb|EG488692.1|EG488692
genomic: TCTTTCGTCAGAGCGTGGGAAGAAAGCGAAAAGAGCAAAGCAGAGAACAAgtaagacatt ... catgaaacagAGCTGAGAAGAAGATTGCAGATGTTCATG
EST: TCTTTCGTCAGAGCGTGGGAAGAAAGCGAAAATAGCAAAGCAGAGAACAA AGCTGAGAAGAAGATTGCAGATGTTCATGCTTGGGAAAACAGCAAGAAAGCEST: gi|125024453|gb|EL096722.1|EL096722
genomic: TCTTTCGTCAGAGCGTGGGAAGAAAGCGAAAAGAGCAAAGCAGAGAACAAgtaagacatt ... catgaaacagAGCTGAGAAGAAGATTGCAGATGTTCATGCTTGGGAAAACAGCAAGAAAGC
EST: AGAGCAAAGCAGAGAACAA AGCTGAGAAGAAGATTGCAGATGTTCATGCTTGGGAAAACAGCAAGAAAGCEST: gi|124836676|gb|EH921115.1|EH921115
genomic: AGAGCAAAGCAGAGAACAAgtaagacatt ... catgaaacagAGCTGAGAAGAAGATTGCAGATGTTCATGCTTGGGAAAACAGCAAGAAAGC
EST: AAGCAGAGAACAA AGCTGAGAAGAAGATTGCAGATGTTCATGCTTGGGAAAACAGCAAGAAAGTEST: gi|124910044|gb|EH984124.1|EH984124
genomic: AAGCAGAGAACAAgtaagacatt ... catgaaacagAGCTGAGAAGAAGATTGCAGATGTTCATGCTTGGGAAAACAGCAAGAAAGC
EST: CTTTCGTCAGAGCGTGGGAAGAAAGCGAAAAGTAGCAAAGCAGAGAACAA AGCTGAGAAGAAGATTGCAGATGTTCATGCTTGGGAAAACAGCAAGAAAGEST: gi|124776723|gb|EH866798.1|EH866798
genomic: CTTTCGTCAGAGCGTGGGAAGAAAGCGAAAAG-AGCAAAGCAGAGAACAAgtaagacatt ... catgaaacagAGCTGAGAAGAAGATTGCAGATGTTCATGCTTGGGAAAACAGCAAGAAAG
EST: CAAAGCAGAGAACAA AGCTGAGAAGAAGATTGCAGATGTTCATGCTTGGGAAAACAGCAAGAAAGAEST: gi|125123239|gb|EL169688.1|EL169688
genomic: CAAAGCAGAGAACAAgtaagacatt ... catgaaacagAGCTGAGAAGAAGATTGCAGATGTTCATGCTTGGGAAAACAGCAAGAAAG-
EST: AGCAAAGCAGAGAACAA AGCTGAGAAGAAGATTGCAGATGTTCATGCTTGGGAAAACAGCAAGAAAGCEST: gi|124705958|gb|EH797360.1|EH797360
genomic: AGCAAAGCAGAGAACAAgtaagacatt ... catgaaacagAGCTGAGAAGAAGATTGCAGATGTTCATGCTTGGGAAAACAGCAAGAAAGC
EST: TTTCGTCAGAGCGTGGGAAGAAAGCGAAAAGAGCAAAGCAGAGAACAA AGCTGAGAAGAAGATTGCAGATEST: gi|86080975|gb|DR376732.1|DR376732
genomic: TTTCGTCAGAGCGTGGGAAGAAAGCGAAAAGAGCAAAGCAGAGAACAAgtaagacatt ... catgaaacagAGCTGAGAAGAAGATTGCAGAT
EST: TCTTTCGTCAGAGCGTGGGAAGAAAGCGAAAAGAGCAAAGCAGAGAACAA AGCTGAGAAGAAGATTGCAGATGTTCATGCTTGGGAAAACAGCAAGAAAGCEST: gi|116446101|gb|EG488693.1|EG488693
genomic: TCTTTCGTCAGAGCGTGGGAAGAAAGCGAAAAGAGCAAAGCAGAGAACAAgtaagacatt ... catgaaacagAGCTGAGAAGAAGATTGCAGATGTTCATGCTTGGGAAAACAGCAAGAAAGC
EST: TCTTTCGTCAGAGCGTGGGAAGAAAGCGAAAATAGCAAAGCAGAGAACAA AGCTGAGAAGAAGATTGCAGATGTTCATGCTTGGGAAAACAGCAAGAAAGCEST: gi|125012038|gb|EL084307.1|EL084307
genomic: TCTTTCGTCAGAGCGTGGGAAGAAAGCGAAAAGAGCAAAGCAGAGAACAAgtaagacatt ... catgaaacagAGCTGAGAAGAAGATTGCAGATGTTCATGCTTGGGAAAACAGCAAGAAAGC
EST: AGAGCAAAGCAGAGAACAA AGCTGAGAAGAAGGTTGCAGATGTTCATGCTTGGGAAAACAGCAAGAAAGCEST: gi|125262961|gb|EL277046.1|EL277046
genomic: AGAGCAAAGCAGAGAACAAgtaagacatt ... catgaaacagAGCTGAGAAGAAGATTGCAGATGTTCATGCTTGGGAAAACAGCAAGAAAGC
EST: TTCGTCAGAGCGTGGGAAGAAAGCGAAAAGAGCAAAGCAGAGAACAA AGCTGAGAAGAAGATTGCAGATGTTCATGCTTGGGAAAAEST: gi|116446103|gb|EG488695.1|EG488695
genomic: TTCGTCAGAGCGTGGGAAGAAAGCGAAAAGAGCAAAGCAGAGAACAAgtaagacatt ... catgaaacagAGCTGAGAAGAAGATTGCAGATGTTCATGCTTGGGAAAA
EST: TCTTTCGTCAGAGCGTGGGAAGAAAGCGAAAATAGCAAAGCAGAGAACAA AGCTGAGAAGAAGATTGCAGATGTTCATGCTTGGGAAAACAGCAAGAAAGCEST: gi|125212527|gb|EL227481.1|EL227481
genomic: TCTTTCGTCAGAGCGTGGGAAGAAAGCGAAAAGAGCAAAGCAGAGAACAAgtaagacatt ... catgaaacagAGCTGAGAAGAAGATTGCAGATGTTCATGCTTGGGAAAACAGCAAGAAAGC
EST: CTTTCGTCATAGCGTGGGAAGAAAGCGAAAAGAGCAAAGCAGAGAACAA AGCTGAGAAGAAGATTGCAGATGTTCATGCTTGGGAAAACAGCAAGAAAGEST: gi|124847339|gb|EH931776.1|EH931776
genomic: CTTTCGTCAGAGCGTGGGAAGAAAGCGAAAAGAGCAAAGCAGAGAACAAgtaagacatt ... catgaaacagAGCTGAGAAGAAGATTGCAGATGTTCATGCTTGGGAAAACAGCAAGAAAG
EST: AAGAAAGCGAAAAGAAGCAAAGCAGAGAACAA AGCTGAGAAGAAGATTGCAGATGTTCATGCTTEST: gi|124874305|gb|EH955950.1|EH955950
genomic: AAGAAAGCGAAAAG-AGCAAAGCAGAGAACAAgtaagacatt ... catgaaacagAGCTGAGAAGAAGATTGCAGATGTTCATGCTT
EST: TCTTTCGTCAGAGCGTGGGAAGAAAGCGAAAAGAGCAAAGCAGAGAACAA AGCTGAGAAGAAGATTGCAGATGTTCATGCT
genomic: TCTTTCGTCAGAGCGTGGGAAGAAAGCGAAAAGAGCAAAGCAGAGAACAAgtaagacatt ... catgaaacagAGCTGAGAAGAAGATTGCAGATGTTCATGCT
gttttggcttttttatgttctttgcctgattttgctgactattgacatgaaacagAGCTGAGAAGAAGATTGCAGATGTTCATGCTTGGGAAAACAGCAAGAAAGCAGCTGTCGAAGCGCAACTCAAGAAAATCGAG
tattgac putative branch site (score: 2)
ttttttatgttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagacattttattttatcgtcactggttttaggttttggcttttttatgttctttgcctgattttgctgactattgacatgaaacagAGCTGAGAAGAAGATTGCAGATGTTCATGCTTGGGAAAACAGCAAGAAAGCAGCTGTCGAAGCGCAACTCAAGAAAATCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA