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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cctaagataggtccaatttgttggaatggaaaacacttgccacaatgcaccttggcaatcaaagagtgtaatattcgttgttgtgttgactaatttccagGCAGCAACCATGGTAGTAAGATATTCTGTTGAACCTCTTCTTGAAGATTACAGACCACCAGGAATTACTTCCCTCAAGTTCAGCAAATTGACCTTGGGTA

Basic information

species Arabidopsis thaliana
transcript AT3G60950.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G60950.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA07G09070.1 (Glycine max), 3'ss of exon 4
--cctaagataggtccaatttgttgg--aatggaaaacacttgccacaatgcaccttggca-atcaaagagtgtaatattcgttgttgtgttgactaatttccagGCAGCAACCATGGTAGTAAGATATTCTGTTGAACCTCTTCTTGAAGATTACAGACCACCAGGAATTACTTCCCTCAAGTTCAGCAAATTGACCTTGGGTA
  |||    || ||  |||||  | |  ||   | |    ||  |    |   | |    | || |     | | |||||  ||| |   ||   |   ||  ||||||||||||||||  ||||| | ||||||||||| || || ||||| |||||||| ||||||||||||||  | |||||||||||  || |  | || |
gaccttt--tacgttaaatttccttgcaaacatagaggtgttttcctgttttgcttaaatagatgatgtgatttgatattgattgat---tttgttttcttttagGCAGCAACCATGGTGATAAGAGAATCTGTTGAACCACTGCTAGAAGAGTACAGACCTCCAGGAATTACTTCATTGAAGTTCAGCAAGCTGTCACTTGGAA

upper sequence: AT3G60950.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA03G02370.2 (Glycine max), 3'ss of exon 3
cctaagataggtccaatttgttggaatggaaaacactt-gccacaatgcaccttggc--aatcaaagagtgtaatattcgttgttgtgttgactaatttccagGCAGCAACCATGGTAGTAAGATATTCTGTTGAACCTCTTCTTGAAGATTACAGACCACCAGGAATTACTTCCCTCAAGTTCAGCAAATTGACCTTGGGTA
    |||    |   |||   |    | | |||||    |    | | |   || ||  ||  | |     |||||||  ||| |   ||   |   ||  ||||||||||| ||||  | ||| | ||||||||||| || || ||||| |||||||| ||||||||||||||  | |||||||||||  || |  | || |
ttggagaccttttacattaaatttccttgcaaacatagaggtgtattcctgttttgcttaaatagatgacataatattgattgat---tttgttttcttttagGCAGCAACCTTGGTGATCAGAGAATCTGTTGAACCACTGCTAGAAGAGTACAGACCTCCAGGAATTACTTCATTGAAGTTCAGCAAGCTGTCACTTGGAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcaccttggcaatcaaagagtgtaatattcgttgttgtgttgactaatttccagGCAGCAACCATGGTAGTAAGATATTCTGTTGAACCTCTTCTTGAAGATTACAGACCACCAGGAATTACTTCCCTCAAGTTCAGCAAATTGACCTTGGGTA
                                          gactaat  putative branch site (score: 2)
                                                tttcc  CT-rich tract
                     tgtaatatt  TA-rich tract