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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgtagcaaccaccaattactctgtttttatggtgaaaagcttagaagtgatatattgttacctgttgttgcggctgctggattgtgtagGAACCCTTGATTCATTGATG

Basic information

species Arabidopsis thaliana
transcript AT3G60910.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86088135|gb|DR383894.1|DR383894
EST:     AGATATGAGTTACTTTGAAGACGATTCCTTTGACACTATTATTGATAAAG                         GAACCCTTGATTCATTGATG
genomic: AGATATGAGTTACTTTGAAGACGATTCCTTTGACACTATTATTGATAAAGgtatgttgta ... gattgtgtagGAACCCTTGATTCATTGATG
EST: gi|86057616|gb|DR353373.1|DR353373
EST:     AGATATGAGTTACTTTGAAGACGATTCCTTTGACACTATTATTGATAAAG                         GAACCCTTGATTCATTGATG
genomic: AGATATGAGTTACTTTGAAGACGATTCCTTTGACACTATTATTGATAAAGgtatgttgta ... gattgtgtagGAACCCTTGATTCATTGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaagcttagaagtgatatattgttacctgttgttgcggctgctggattgtgtagGAACCCTTGATTCATTGATG
               atatattgtta  TA-rich tract