1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaccaatttatattgtttgattctctttgttttatcttcttcttttcattatatatatgatcaacaaaaaatataacctacaaaaagagagagttcttggaaatgcattgaaacggtttcgttatggtgtttgaatacatggatttttgaagTACTATCAGCAAGAAGCCTCTAAGCTTCGGAGGCAGATTCGAGATATTCAGAATTCAAATAG
species | Arabidopsis thaliana |
transcript | AT3G58780.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTGTTCCGATGCCGTCAACCCTCCTTCCGTCACCGAAGCTAATACTCAG TACTATCAGCAAGAAGCCTCTAAGCTTCGGAGGCAGATTCGAGATATTCEST: gi|164041619|gb|ES120989.1|ES120989
genomic: CTTGTTCCGATGCCGTCAACCCTCCTTCCGTCACCGAAGCTAATACTCAGgtaccaattt ... atttttgaagTACTATCAGCAAGAAGCCTCTAAGCTTCGGAGGCAGATTCGAGATATTC
EST: CTTGTTCCGATGCCGTCAACCCTCCTTCCGTCACCGAAGCTAATACTCAG TACTATCAGCAAGAAEST: gi|164219907|gb|ES186995.1|ES186995
genomic: CTTGTTCCGATGCCGTCAACCCTCCTTCCGTCACCGAAGCTAATACTCAGgtaccaattt ... atttttgaagTACTATCAGCAAGAA
EST: CTTGTTCCGATGCCGTCAACCCTCCTTCCGTCACCGAAGCTAATACTCAG TACTATCAGCAAGAAEST: gi|164116158|gb|ES155755.1|ES155755
genomic: CTTGTTCCGATGCCGTCAACCCTCCTTCCGTCACCGAAGCTAATACTCAGgtaccaattt ... atttttgaagTACTATCAGCAAGAA
EST: CTTGTTCCGATGCCGTCAACCCTCCTTCCGTCACCGAAGCTAATACTCAG TACTATCAGCAAGAAGCCTCTAAGCTTCGGAGG
genomic: CTTGTTCCGATGCCGTCAACCCTCCTTCCGTCACCGAAGCTAATACTCAGgtaccaattt ... atttttgaagTACTATCAGCAAGAAGCCTCTAAGCTTCGGAGG
tggaaatgcattgaaacggtttcgttatggtgtttgaatacatggatttttgaagTACTATCAGCAAGAAGCCTCTAAGCTTCGGAGGCAGATTCGAGATATTCAGAATTCAAATAG
ttttt CT-rich tract
atttttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccaatttatattgtttgattctctttgttttatcttcttcttttcattatatatatgatcaacaaaaaatataacctacaaaaagagagagttcttggaaatgcattgaaacggtttcgttatggtgtttgaatacatggatttttgaagTACTATCAGCAAGAAGCCTCTAAGCTTCGGAGGCAGATTCGAGATATTCAGAATTCAAATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT