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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccccccaactttgatggtttagaatgtgaaactgttcttcatacgtcgacatttgttttgatctgaggtttatcttttgcagTTTGTGATTGGTGGAAATCATGAAGGAAACCCATTGTTCCTTGGTGTTCAGATTCATGACAAAGTCACTAACAAGTG

Basic information

species Arabidopsis thaliana
transcript AT3G57550.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124719870|gb|EH811272.1|EH811272
EST:     AATCCGAGCCTAAGAACAGAGATACATCTGTGCTTATTGGGGATCGATCC                         TTTGTGATTGGTGGAAATCATGAAGGAAACCCA
genomic: AATCCGAGCCTAAGAACAGAGATACATCTGTGCTTATTGGGGATCGATCCgtaagccccc ... tcttttgcagTTTGTGATTGGTGGAAATCATGAAGGAAACCCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaactgttcttcatacgtcgacatttgttttgatctgaggtttatcttttgcagTTTGTGATTGGTGGAAATCATGAAGGAAACCCATTGTTCCTTGGTGTTCAGATTCATGACAAAGTCACTAACAAGTG
                            ttttgat  putative branch site (score: 4)
                                         tttatctttt  putative PPT
                                         tttatctttt  TA-rich tract