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gttagtatttaaaacttcttctagtttgcgacctttgaaatcaatatagatgtgagagtatatatgctaactaccatttgttttttcagAGTTTTTCATCGCCGTTAAACCAGGTGCAGAACAGGATTTGGTTGATGCATTGGGGTCTGTATATCTTTTTTAACCATGATAATGGAAGGACACAGATCA
species | Arabidopsis thaliana |
transcript | AT3G57290.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTGAAGAGCTTAACCGTCTCAAAGAGATTATTGACTCAAAG AGTTTTTCATCGCCGTTAAACCAGGTGCAGAACAGGATTTGGTTGATGCATEST: gi|164051992|gb|ES102452.1|ES102452
genomic: CTTGAAGAGCTTAACCGTCTCAAAGAGATTATTGACTCAAAGgttagtattt ... gttttttcagAGTTTTTCATCGCCGTTAAACCAGGTGCAGAACAGGATTTGGTTGATGCAT
EST: ATATTGCTCTTGAAGAGCTTAACCGTCTCAAAGAGATTATTGACTCAAAG AGTTTTTCATCGCCEST: gi|163970782|gb|ES090400.1|ES090400
genomic: ATATTGCTCTTGAAGAGCTTAACCGTCTCAAAGAGATTATTGACTCAAAGgttagtattt ... gttttttcagAGTTTTTCATCGCC
EST: ATATTGCTCTTGAAGAGCTTAACCGTCTCAAAGAGATTATTGACTCAAAG AGTTTT-CGTCGCCGTTAAACCAGGTGEST: gi|86078869|gb|DR374626.1|DR374626
genomic: ATATTGCTCTTGAAGAGCTTAACCGTCTCAAAGAGATTATTGACTCAAAGgttagtattt ... gttttttcagAGTTTTTCATCGCCGTTAAACCAGGTG
EST: ATATTGCTCTTGAAGAGCTTAACCGTCTCAAAGAGATTATTGACTCAAAG AGTTTTTCATCGCCGTTAAACCAGGTGCAGAACAGGATTTGGTTGATGCATEST: gi|163984424|gb|ES084195.1|ES084195
genomic: ATATTGCTCTTGAAGAGCTTAACCGTCTCAAAGAGATTATTGACTCAAAGgttagtattt ... gttttttcagAGTTTTTCATCGCCGTTAAACCAGGTGCAGAACAGGATTTGGTTGATGCAT
EST: ATATTGCTCTTGAAGAGCTTAACCGTCTCAAAGAGATTATTGACTCAAAG AGTTTTTCGTCGCCGTTAAACCAGGTG
genomic: ATATTGCTCTTGAAGAGCTTAACCGTCTCAAAGAGATTATTGACTCAAAGgttagtattt ... gttttttcagAGTTTTTCATCGCCGTTAAACCAGGTG
ttgaaatcaatatagatgtgagagtatatatgctaactaccatttgttttttcagAGTTTTTCATCGCCGTTAAACCAGGTGCAGAACAGGATTTGGTTGATGCATTGGGGTCTGTATATCTTTTTTAACCATGATAATGGAAGGACACAGATCA
tgctaac putative branch site (score: 1)
ccatttgttttttc putative PPT
atttgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtatttaaaacttcttctagtttgcgacctttgaaatcaatatagatgtgagagtatatatgctaactaccatttgttttttcagAGTTTTTCATCGCCGTTAAACCAGGTGCAGAACAGGATTTGGTTGATGCATTGGGGTCTGTATATCTTTTTTAACCATGATAATGGAAGGACACAGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA