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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtggattttgctaactactttggtttggttactttgagacaattaggtcaaaatttggtttagttttgagaacataatgacaattaggtcaaaatcacatgatcttcttataacagGTGGATGGGTTGGTTACTTTTCTTATGATACTGTTCCCTATGCCGAAAAGCGAAAGCTACCTCTCTCAAAGGCTCCGGTTGATGACCGAAATTTACCAGA

Basic information

species Arabidopsis thaliana
transcript AT3G55870.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G55870.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: PP1S77_252V6.1 (Physcomitrella patens), 3'ss of exon 4
gtgagtggattttgctaactactttggtttggtt-actttgagacaattaggtcaaaatttggtttagttttgagaacataatgaca-attaggtcaaaatcacatgatcttcttataacagGTGGATGGGTTGGTTACTTTTCTTATGATACTGTTCCCTATGCCGAAAAGCGAAAGCTACCTCTCTCAAAGGCTCCGGTTGATGACCGAAATTTACCAGA
                   | |||||  | ||   | | | ||    ||| ||  || |   || ||  |||||| |     ||| | ||   ||  |  ||   ||| | |   ||   |||||||||||||||||||||||| ||||| || ||    ||||  || ||    |||||| |  | |||   || ||    |||||||||  | |||| ||
-----------------tgttctttgtataggcagagtcttagcagtttatgtttaagtccagtata--tttgagcatgagctgaaatatgtagttgatgtc-tttgagcatg--attgtagGTGGATGGGTTGGTTACTTTTCGTATGACACAGTAAGGTATGTGGAGAAAAAGAAGCTAGCCTTTTCATCAGCACCCAAAGATGACCGAGGTCTACCTGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttttgagaacataatgacaattaggtcaaaatcacatgatcttcttataacagGTGGATGGGTTGGTTACTTTTCTTATGATACTGTTCCCTATGCCGAAAAGCGAAAGCTACCTCTCTCAAAGGCTCCGGTTGATGACCGAAATTTACCAGA
                                         tcttcttat  CT-rich tract
                                           ttcttataa  TA-rich tract