Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttgaattcagtgacatgctttgttttggtccatacttcatgactttttctctgcattggatagGCGTCGCTGAAGACAGAACGAGAGAAGAAGAAAGACATGTACTTTCCAATTAGAAAGTATGCCATCAAAGTTTAATTATCTTTCTACTGTCAGAGAGTCC

Basic information

species Arabidopsis thaliana
transcript AT3G55170.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86081163|gb|DR376920.1|DR376920
EST:     TCCGTCCCAAGAAGACTAGAGCCATCAGAAGGAGACTCACTAAACACCAG                         GCGTCGCTGAAGACAGAACGAGAGAAGAAGAAAGACATGTACTTTCCAATT
genomic: TCCGTCCCAAGAAGACTAGAGCCATCAGAAGGAGACTCACTAAACACCAGgtattttgaa ... cattggatagGCGTCGCTGAAGACAGAACGAGAGAAGAAGAAAGACATGTACTTTCCAATT
EST: gi|125219873|gb|EL233958.1|EL233958
EST:     TCCGTCCCAAGAAGACTAGAGCCATCAGAAGGAGACTCACTAAACACCAG                         GCGTCGCTGAAGACAGAACGAGAGAAGAAGAAAGACATGTA
genomic: TCCGTCCCAAGAAGACTAGAGCCATCAGAAGGAGACTCACTAAACACCAGgtattttgaa ... cattggatagGCGTCGCTGAAGACAGAACGAGAGAAGAAGAAAGACATGTA
EST: gi|222358188|gb|GH717948.1|GH717948
EST:     TCCGTCCCAAGAAGACTAGAGCCATCAGAAGGAGACTCACTAAACACCAG                         GCGTCGCTGAAGACAGAACGAGAGAAGAAGAAAGACATGTACTTTCCAATT
genomic: TCCGTCCCAAGAAGACTAGAGCCATCAGAAGGAGACTCACTAAACACCAGgtattttgaa ... cattggatagGCGTCGCTGAAGACAGAACGAGAGAAGAAGAAAGACATGTACTTTCCAATT
EST: gi|19741057|gb|AU226410.1|AU226410
EST:     TCCGTCCCAAGAAGACTAGAGCCATCAGAAGGAGACTCACTAAACACCAG                         GCGTCGCTGAAGACAGAACGAGAGAAGAAGAAAGACATGTACTTTCCAATT
genomic: TCCGTCCCAAGAAGACTAGAGCCATCAGAAGGAGACTCACTAAACACCAGgtattttgaa ... cattggatagGCGTCGCTGAAGACAGAACGAGAGAAGAAGAAAGACATGTACTTTCCAATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtgacatgctttgttttggtccatacttcatgactttttctctgcattggatagGCGTCGCTGAAGACAGAACGAGAGAAGAAGAAAGACATGTACTTTCCAATTAGAAAGTATGCCATCAAAGTTTAATTATCTTTCTACTGTCAGAGAGTCC
                                  ctttttctctgcatt  CT-rich tract
          tttgtttt  TA-rich tract