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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaaagaaaatctactcatctatacattgttaatttgagggttattatatatcacttgtgacaatattttacaattatctttcttttgattgcagGTAATACTCTATATGGAGTTATAT

Basic information

species Arabidopsis thaliana
transcript AT3G54830.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124784228|gb|EH873986.1|EH873986
EST:     TATTGGCCATGCCGCTTTTGGTTCCACCGGCCGCATCCTGGTCTCC                         GTAATACTCTATATGGAGTTATAT
genomic: TATTGGCCATGCCGCTTTTGGTTCCACCGGCCGCATCCTGGTCTCCgtaagtaaag ... ttgattgcagGTAATACTCTATATGGAGTTATAT
EST: gi|124903063|gb|EH977143.1|EH977143
EST:     TTCCACCGGCCGCATCCTGGTCTCC                         GTAATACTCTATATGGAGTTATAT
genomic: TTCCACCGGCCGCATCCTGGTCTCCgtaagtaaag ... ttgattgcagGTAATACTCTATATGGAGTTATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttattatatatcacttgtgacaatattttacaattatctttcttttgattgcagGTAATACTCTATATGGAGTTATAT
                                           ttttgat  putative branch site (score: 4)
                                  ttatctttctttt  CT-rich tract
                      aatattttacaattat  TA-rich tract