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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttatgttgtgactgttgttcttaggaaacagtcaggctctatatatttaactttttcgaaggtcatcctgattcatttttttttttttgtaattacccagGATGCTCTCAAACCGAGAATCCGCTAGGCGCTCTAGGAGAAGAAAGCAAGAACAAATGAATGAATTTGATACACAGGTTCGGTCTTTTATTAGTTGCTCA

Basic information

species Arabidopsis thaliana
transcript AT3G54620.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164094234|gb|EL983721.1|EL983721
EST:     GATGGAGACGCAGATAATGGAGATCCTACTGATGTGAAGCGTGCTAGGAG                         GATGCTCTCAAACCGAGAATCCGCTAGGCGCTC
genomic: GATGGAGACGCAGATAATGGAGATCCTACTGATGTGAAGCGTGCTAGGAGgtacaaatct ... aattacccagGATGCTCTCAAACCGAGAATCCGCTAGGCGCTC
EST: gi|116479312|gb|EG521904.1|EG521904
EST:     GATGGAGACGCAGATAATGGAGATCCTACTGATGTGAAGCGTGCTAGGAG                         GATGCTCTCAAACCGAGAATCCGCTAGGCGCTCTAGGAGAAGAAAGCAAGA
genomic: GATGGAGACGCAGATAATGGAGATCCTACTGATGTGAAGCGTGCTAGGAGgtacaaatct ... aattacccagGATGCTCTCAAACCGAGAATCCGCTAGGCGCTCTAGGAGAAGAAAGCAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaactttttcgaaggtcatcctgattcatttttttttttttgtaattacccagGATGCTCTCAAACCGAGAATCCGCTAGGCGCTCTAGGAGAAGAAAGCAAGAACAAATGAATGAATTTGATACACAGGTTCGGTCTTTTATTAGTTGCTCA
                    tcctgat  putative branch site (score: 3)
                              tttttttttttttgta  putative PPT
                       tgattcattttttttt  TA-rich tract