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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttctgtctctaaattttgttgacctaaccgatgggattattctcttttgcaccacttacatttgttatgatgtcccgctgtgagatcttgttctaattcaacttgtatgcgcagGCATTTAGTGCCCAAAATTATGAAAGTGCTAAATCAAGGTTGGCAATGTGTACCGAGGACATTCGGGATCAACTAGGGAGGGAGGGCAATACACCAGAGT

Basic information

species Arabidopsis thaliana
transcript AT3G54360.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124769416|gb|EH859546.1|EH859546
EST:     CTGACGTTTCCATGGAAAGAGGTTCTTTCTTGGTGCAACAAGCTATGAGG                         GCATTTAGTGCCCAAAATTATGAAAGTGCTAAATCAAGGTTGGCAATGTG
genomic: CTGACGTTTCCATGGAAAGAGGTTCTTTCTTGGTGCAACAAGCTATGAGGgtgagttctg ... gtatgcgcagGCATTTAGTGCCCAAAATTATGAAAGTGCTAAATCAAGGTTGGCAATGTG
EST: gi|125279783|gb|EL293868.1|EL293868
EST:     AGGTTCTTTCTTGGTGCAACAAGCTATGAGG                         GCATTTAGTGCCCAAAATTATGAAAGTGCTAAATCAAGGTTGGCAATGTGT
genomic: AGGTTCTTTCTTGGTGCAACAAGCTATGAGGgtgagttctg ... gtatgcgcagGCATTTAGTGCCCAAAATTATGAAAGTGCTAAATCAAGGTTGGCAATGTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgttatgatgtcccgctgtgagatcttgttctaattcaacttgtatgcgcagGCATTTAGTGCCCAAAATTATGAAAGTGCTAAATCAAGGTTGGCAATGTGTACCGAGGACATTCGGGATCAACTAGGGAGGGAGGGCAATACACCAGAGT
                               ttctaat  putative branch site (score: 2)
                               ttctaatt  TA-rich tract