Sequence
atgc intronic sequence ATGC exonic sequencegtaattgtggttttctccttacatatatgggatgataaacaagatatttttagggatgttatgaatctcaactcatccgtggagtgagagacttgggagagtgaggatgtggatgggatttggctaatgtaatatccgtcaatgatgtttgttgctgacatagcttattctcttcaattcacagGCTCCGGAGGGTTATGGTACTCAGCATGATCCAAATCATCG
Basic information
species | Arabidopsis thaliana |
transcript | AT3G54230.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G54230.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA16G18030.1 (Glycine max), 3'ss of exon 1
gtaattgtggttttctccttacatatatgggatgataaacaagatatttttagggatgttatgaatctcaactcatccgtggagtgagagacttgggagagtgaggatgtggatgggatttggctaatgtaatatccgtcaatga--tgtttgttgctgacatagcttattctcttcaattcacagGCTCCGGAGGGTTATGGTACTCAGCATGATCCAAATCATCG
|| |||| | ||| |||| ||||| |||| | || | | |||||| |||||||||||||||||||| ||| ||||||||| ||||| || | || ||||| || || ||
--------------------------------------------------------------------------------------ctagctgtgggggcagtcagatatggactccatttgcctaaccctcgtctcaccatttgattatttgttcctgacatagcttattctcttgaatccacagGCTCTTGAGGGATACAGCACCGTCCATGACCCCAACTTCCG
upper sequence: AT3G54230.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA08G35510.1 (Glycine max), 3'ss of exon 1
gtaattgtggttttctccttacatatatgggatgataaacaagatatttttagggatgttatgaatctcaactcatccgtggagtgagagacttgggagagtgaggatgtggatgggatttggctaatgtaatatccgtcaatgat-gtttgttgctgacatagcttattctcttcaattcacagGCTCCGGAGGGTTATGGTACTCAGCATGATCCAAATCATCG
| || |||| | ||| |||| ||||| |||| | || |||| |||||| |||||||||||||||||||| ||| ||||||||| ||||| || || | || || || || ||
-------------------------------------------------------------------------------------gctagctgtgggggcagtcagatatggactccatttgcctaaccctcgtctcaccattgattatttgttcctgacatagcttattctcttgaatccacagGCTCTTGAGGGATACGGCGCCGTCCACGACCCCAACTTCCG
upper sequence: AT3G54230.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv02s0012g00870.t01 (Vitis vinifera), 3'ss of exon 1
gtaattgtggttttctcctta----catatatgggatgataa-acaagatatt-----tttagggat-----gttatgaatctcaactcatccgtg--------gagtgagagacttgggagagtgaggatgtggatgggatttggctaatgtaatatccgtcaatgat-gtttgttgctgacatagcttattctcttcaattcacagGCTCCGGAGGGTTATGGTACTCAGCATGATCCAAATCATCG
|||| ||||||| | ||||||||||||||| |||||| ||| | | ||| || | || || ||||||| | ||| || || | |||| | ||||||| |||| ||||||| ||| | || | ||||| ||||||||||||||||||||||||||| ||| |||||||| |||||| ||||| || ||||| |||| ||
---------gtttcctccttaatcacctatatgggatgataatacaagaaattagggctcttctgattgtccattttttatggcatctcatccttaagaacaatgagagaaagccgtggggcattgaggatatggaatggatttgcctacc-tcgtacc-----atgattatttgttgctgacatagcttattctcttgaatccacagGCTTTGGAGGGGTATGGAGCTGTTCATGACGCAAACTTCCGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125299566|gb|EL313651.1|EL313651EST: TGGTCGTCAGCAAGAATGGGATAATAACAGT GCTCCGGAGGGTTATGGTACTCAGCATGATCCAAATCATCG
genomic: TGGTCGTCAGCAAGAATGGGATAATAACAGTgtaattgtgg ... caattcacagGCTCCGGAGGGTTATGGTACTCAGCATGATCCAAATCATCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taatatccgtcaatgatgtttgttgctgacatagcttattctcttcaattcacagGCTCCGGAGGGTTATGGTACTCAGCATGATCCAAATCATCG
tgctgac putative branch site (score: 2)
cttattctcttc putative PPT
ttattct TA-rich tract