Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttacttcaaaaggatattagagggtattgatctccgttttctccatagtcaagtgttttgatgtactattctttgttggttttgaccaatatgcagATATGTGACATGGTCGCTGTTGCCAAGATTATGAATGCAACTCTTGTTCTTCCTCTGCTTGACCATGAATCTTTCTGGACTGACCCGAG

Basic information

species Arabidopsis thaliana
transcript AT3G54100.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G54100.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv08s0007g01650.t01 (Vitis vinifera), 3'ss of exon 3
gtgagtttact---tcaaaaggatattagagggtattgatctccgttttct--ccatagtcaagtgttttgatgtactattc-------tttgttggttttgaccaatatgcagATATGTGACATGGTCGCTGTTGCCAAGATTATGAATGCAACTCTTGTTCTTCCTCTGCTTGACCATGAATCTTTCTGGACTGACCCGAG
|| ||  | |    |||  |   | |||||  |  ||  | |  | | |||  || |  |    |  ||    ||||| ||          | ||| |  | |   | || ||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||   ||||| ||||| || || ||||| |||| |||
gtaagcattcggtgtcaccaactttttagaatgctttattatatggtctcttccctttattgtttcattcatagtactttttaagctaacctcttgttacttattgaaatccagATATGTGATATGGTTGCTGTTGCCAAGATTATGAATGCCACTCTTGTTCTTCCTTCTCTTGATCATGAGTCCTTTTGGACAGACCTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccatagtcaagtgttttgatgtactattctttgttggttttgaccaatatgcagATATGTGACATGGTCGCTGTTGCCAAGATTATGAATGCAACTCTTGTTCTTCCTCTGCTTGACCATGAATCTTTCTGGACTGACCCGAG
                                      ttttgac  putative branch site (score: 3)
                         tattcttt  TA-rich tract