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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgaatttccactctgctaattactttataatcatctccacagttgttataacaaagttcatgattgtatatgtatattgacattatgattgcatctgcagGGAGACGCAGACAGTGGCGTGGACAGGCTCTGGCAGAAGAAGAAGGTCGAAGCTAAACAACAGTGAGAGACAATCTGACAATGTCATAAGCTCTTGTTTG

Basic information

species Arabidopsis thaliana
transcript AT3G53890.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86060807|gb|DR356564.1|DR356564
EST:     ACACTGGCCAATTCACCACTTTTGCTCTCTGCGGATTTGTCCATGCTCAG                         GGAGACGCAGACAGTGGCGTGGACAGGCTCTGGCAGAAGAAGAAGGTCGAA
genomic: ACACTGGCCAATTCACCACTTTTGCTCTCTGCGGATTTGTCCGTGCTCAGgtttgtgaat ... gcatctgcagGGAGACGCAGACAGTGGCGTGGACAGGCTCTGGCAGAAGAAGAAGGTCGAA
EST: gi|125205341|gb|EL220295.1|EL220295
EST:     ACACTGGCCAATTCACCACTTTTGCTCTCTGCGGATTTGTCCGTGCTCAG                         GGAGACGCAGACA
genomic: ACACTGGCCAATTCACCACTTTTGCTCTCTGCGGATTTGTCCGTGCTCAGgtttgtgaat ... gcatctgcagGGAGACGCAGACA
EST: gi|164211146|gb|ES109742.1|ES109742
EST:     CACTGGCCAATTCACCACTTTTGCTCTCTGCGGATTTGTCCGTGCTCAG                         GGAGACGCAGACAGTGGCGTGGACAGGCTCTGGCAGAAGAAGAAGGTC
genomic: CACTGGCCAATTCACCACTTTTGCTCTCTGCGGATTTGTCCGTGCTCAGgtttgtgaat ... gcatctgcagGGAGACGCAGACAGTGGCGTGGACAGGCTCTGGCAGAAGAAGAAGGTC
EST: gi|164206816|gb|ES043164.1|ES043164
EST:     CAATTCACCACTTTTGCTCTCTGCGGATTTGTCCGTGCTCAG                         GGAGACGCAGACAGTGGCGTGGACAGGCTCTGGCAGAAGAAGAAGGTCGAA
genomic: CAATTCACCACTTTTGCTCTCTGCGGATTTGTCCGTGCTCAGgtttgtgaat ... gcatctgcagGGAGACGCAGACAGTGGCGTGGACAGGCTCTGGCAGAAGAAGAAGGTCGAA
EST: gi|164205232|gb|ES192637.1|ES192637
EST:     TGCGGATTTGTCCGTGCTCAG                         GGAGACGCAGACAGTGGCGTGGACAGGCTCTGGCAGAAGAAGAAGG
genomic: TGCGGATTTGTCCGTGCTCAGgtttgtgaat ... gcatctgcagGGAGACGCAGACAGTGGCGTGGACAGGCTCTGGCAGAAGAAGAAGG
EST: gi|86086803|gb|DR382562.1|DR382562
EST:     ACACTGGCCAATTCACCACTTTTGCTCTCTGCGGATTTGTCCGTGCTCAG                         GGAGACGCAGACAGTGGCGTGGACAGGCTTTGGCAGAAGAAGAAGGTCGAA
genomic: ACACTGGCCAATTCACCACTTTTGCTCTCTGCGGATTTGTCCGTGCTCAGgtttgtgaat ... gcatctgcagGGAGACGCAGACAGTGGCGTGGACAGGCTCTGGCAGAAGAAGAAGGTCGAA
EST: gi|164089665|gb|ES095053.1|ES095053
EST:     CCAATTCACCACTTTTGCTCTCTGCGGATTTGTCCGTGCTCAG                         GGAGACGCAGACAGTGGCGTGGAC
genomic: CCAATTCACCACTTTTGCTCTCTGCGGATTTGTCCGTGCTCAGgtttgtgaat ... gcatctgcagGGAGACGCAGACAGTGGCGTGGAC
EST: gi|164005018|gb|ES073090.1|ES073090
EST:     ACACTGGCCAATTCACCACTTTTGCTCTCTGCGGATTTGTCCGTGCTCAG                         GGAGACGCAGACAGTG
genomic: ACACTGGCCAATTCACCACTTTTGCTCTCTGCGGATTTGTCCGTGCTCAGgtttgtgaat ... gcatctgcagGGAGACGCAGACAGTG
EST: gi|164224113|gb|ES059063.1|ES059063
EST:     ACGCTGGCCAATTCACCACTTTTGCTCTCTGCGGATTTGTCCGTGCTCAG                         GGAGACGCAGACAGTGGCGTGG
genomic: ACACTGGCCAATTCACCACTTTTGCTCTCTGCGGATTTGTCCGTGCTCAGgtttgtgaat ... gcatctgcagGGAGACGCAGACAGTGGCGTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttataacaaagttcatgattgtatatgtatattgacattatgattgcatctgcagGGAGACGCAGACAGTGGCGTGGACAGGCTCTGGCAGAAGAAGAAGGTCGAAGCTAAACAACAGTGAGAGACAATCTGACAATGTCATAAGCTCTTGTTTG
                             tattgac  putative branch site (score: 2)
                 attgtatatgtatatt  TA-rich tract