1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatctctatctgtattgagaaatatctgtttagacttgagagttccgagtttagtcaagcttgatgtaaccttaagtgtctatttatttgtttttgtagTTTTACAATACATACCGGTGCCGGGTTGATTGTTCCAGAAATTCAAGATGACGGACAG
species | Arabidopsis thaliana |
transcript | AT3G53580.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCTTTGCTAGGTTCATTGCTGAGCTTGAGAATTTGCAGGGAAAACATAG TTTTACAATACAEST: gi|86065673|gb|DR361430.1|DR361430
genomic: TGCTTTGCTAGGTTCATTGCTGAGCTTGAGAATTTGCAGGGAAAACATAGgtatctctat ... gtttttgtagTTTTACAATACA
EST: TGCTTTGCTAGGTTCATTGCTGAGCTTGAGAATTTGCAGGGAAAACATAG TTTTACAATACATACCGGTGCCGEST: gi|86065706|gb|DR361463.1|DR361463
genomic: TGCTTTGCTAGGTTCATTGCTGAGCTTGAGAATTTGCAGGGAAAACATAGgtatctctat ... gtttttgtagTTTTACAATACATACCGGTGCCG
EST: TGCTTTGCTAGGTTCATTGCTGAGCTTGAGAATTTGCAGGGAAAACATAG TTTTACAATACATAEST: gi|125132887|gb|EL174674.1|EL174674
genomic: TGCTTTGCTAGGTTCATTGCTGAGCTTGAGAATTTGCAGGGAAAACATAGgtatctctat ... gtttttgtagTTTTACAATACATA
EST: GCTTTGCTAGGTTCATTGCTGAGCTTGAGAATTTGCAAGGGAAAACATAG TTTTACAATACATAC
genomic: GCTTTGCTAGGTTCATTGCTGAGCTTGAGAATTTGCA-GGGAAAACATAGgtatctctat ... gtttttgtagTTTTACAATACATAC
ccgagtttagtcaagcttgatgtaaccttaagtgtctatttatttgtttttgtagTTTTACAATACATACCGGTGCCGGGTTGATTGTTCCAGAAATTCAAGATGACGGACAG
atgtaac putative branch site (score: 3)
tttgttttt putative PPT
tatttatttgtttttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatctctatctgtattgagaaatatctgtttagacttgagagttccgagtttagtcaagcttgatgtaaccttaagtgtctatttatttgtttttgtagTTTTACAATACATACCGGTGCCGGGTTGATTGTTCCAGAAATTCAAGATGACGGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG