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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgtagaaatttgagcttaccgttttcaccgctgatctagatgccttgtctcatggatttattttgttatgatgtgttattgtagTGTACACAGTATCACTGAGACAGCAGTTACAGGACGTCTCTAAGAAGCTAGTTGGTGCTCTGCATTATAACAAGGACGGTTCTGTGAATAACAG

Basic information

species Arabidopsis thaliana
transcript AT3G53390.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G53390.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA03G33740.1 (Glycine max), 3'ss of exon 3
gtaatgtagaaatttg----agcttaccgttttcaccgctgatctagatgccttgtctcatggatttatt-ttgttatgatgtgttattgtagTGTACACAGTATCACTGAGACAGCAGTTACAGGACGTCTCTAAGAAGCTAGTTGGTGCTCTGCATTATAACAAGGACGGTTCTGTGAATAACAG
|||| | ||   ||||    |  ||| | |||       |||   | ||     |  | ||| ||||||| ||  |||| ||| |  ||||||| ||| |||| ||| |||||||||| |||||||| ||   ||| ||||| ||||| || | |||||||||||| || |||||||| ||||||||
gtaaagaagtcttttgctaaaatttaacttttcattttgtgaggaaaat-ttaagcgttatgaatttattgttcctatg-tgtatccttgtagTCTACTCAGTGTCATTGAGACAGCAATTACAGGATGTTGGTAAAAAGCTTGTTGGGGCCCAGCATTATAACAAAGATGGTTCTGTCAATAACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctgatctagatgccttgtctcatggatttattttgttatgatgtgttattgtagTGTACACAGTATCACTGAGACAGCAGTTACAGGACGTCTCTAAGAAGCTAGTTGGTGCTCTGCATTATAACAAGGACGGTTCTGTGAATAACAG
 cgctgat  putative branch site (score: 4)
                          atttattttgttatga  TA-rich tract