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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaaaaaaactcagtaatttggatctgttttgttgtttgtactttgttttttttcattgatcctgatttgttaacattctaaaactctgtttcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCATACTCAAGGTCCATTGTTGGTGCTACCTTGGAAGTAATTCAGAAGAAGA

Basic information

species Arabidopsis thaliana
transcript AT3G53020.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G53020.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os01g59990.1 (Oryza sativa), 3'ss of exon 4
gtaaaaaaaaaactcagtaatttggatctgttttgttgtttgtac---tttgttttttttcattgatcctgatttgttaacattctaaaactctgt-ttcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCATACTCAAGGTCCATTGTTGGTGCTACCTTGGAAGTAATTCAGAAGAAGA
         |    |||| ||  |  | |  |        ||       ||| |   ||  ||    ||     || ||   |||| ||  ||    ||    | |||||          || ||||| ||||  ||| | ||  |||||||||||||||||||| |||| ||||||||||||||  ||||||| || || |||||||
--------catgtgcagttatccgagttttctgcagcaactggctggaattgctgccttatatcatgcccttgctgctatttttctgaatttcaacgttgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCATACTCACGGTCAATTGTTGGTGCTACACTGGAAGTTATCCAAAAGAAGA

upper sequence: AT3G53020.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os05g40820.3 (Oryza sativa), 3'ss of exon 4
gtaaaaaaaaaactcagtaatttggatctgtttt--gttgtttgtactttgttttttttc--attgatcctgatttgttaacattctaaaact-ctgtttcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCATACTCAAGGTCCATTGTTGGTGCTACCTTGGAAGTAATTCAGAAGAAGA
         |  |||| |   ||| || | | |   |||  |  | || ||| ||  |||  ||         | |||| |||  ||    |   | | | |||| ||||||         || ||||| ||||  ||| | ||  ||||||||||||||||||| ||||| |||||||||||| | |||||||| || || |||||||
---------atgctcaattccttgtatatatgtacagttagtcatgctatgtattgcttccgatcagataaattctgtttacaccctttcccaattttctgttttttagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCATACTCTAGGTCAATTGTTGGTGCTTCGTTGGAAGTCATCCAAAAGAAGA

upper sequence: AT3G53020.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G142640_T02 (Zea mays), 3'ss of exon 5
gtaaaaaaaaaactcagtaatttggatctgttttgttgtttgtactttgttttttttcattgatcctgatt-tgttaacattctaaaactc---tgtttcttttatagGATGCAGCACAA-------GAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCATACTCAAGGTCCATTGTTGGTGCTACCTTGGAAGTAATTCAGAAGAAGA
             ||  |   || ||||  | |  | ||||| |  || ||| |      || |  | ||  || ||  | |||| | ||    || || |||| | |  || || | |        || || || ||||  ||| | || |||||||||||||||||||| ||||| ||||| |||||| ||||||||||||| ||||||||||
------------atcgatccatttgatc-atgtcatcgtttgcaaattatttctgcca--tgcttataatagtgctataagtctatagcttacatgcttttttttttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCATACTCCAGGTCAATTGTGGGTGCTTCCTTGGAAGTAATCCAGAAGAAGA

upper sequence: AT3G53020.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G074898_T03 (Zea mays), 3'ss of exon 4
gtaaaaaaaaaactcagtaatttggatctgttttgttgtttgtactttgttttttttcattgatcctgatttgttaacattctaaaactctgt--ttcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCATACTCAAGGTCCATTGTTGGTGCTACCTTGGAAGTAATTCAGAAGAAGA
  ||  | |  | |  | ||     ||   || ||   |    ||  || |  |    |    ||  ||     | |  ||  |    | |||  ||  | | |||||          || ||||| ||||  ||| | || |||||||||||||||||||| ||||||||||| |||||| |||||||||| || ||||||||||
ccaactagacgatt--gcaacaacaattgtttctgccatgctaacaatggtgct----agaagtctagagcctctgatcttaaatgtatttgtcatttgtctgtagGACATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCGCCACCAAGAAGCCATACTCGAGGTCCATTGTGGGTGCTTCCTTGGAAGTGATCCAGAAGAAGA

upper sequence: AT3G53020.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G110328_T03 (Zea mays), 3'ss of exon 4
-gtaaaaaaaaaactcagtaatttggatctgttttgttgtttgtactttgttttttttcattgatcctgatttgttaacattctaaaactctgtttcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCATACTCAAGGTCCATTGTTGGTGCTACCTTGGAAGTAATTCAGAAGAAGA
  |   || ||| ||  | ||     ||   | | |       || | ||    |    |    ||  ||    || ||||     | |  | ||   | | ||||||         |||||||| ||||  ||| | || |||||||||||||||||||| ||||||||||| |||||| || | || || || ||||||||||
catctgaataaatctttgcaacaacaattactctcgccacacttattatggcgct----aaaagtctagaaccttttacatgtattagccat-ttctgtctgtagGATATCCATGCTGAGGCTGTCAAGAAGAGGCGCCGCGCCACCAAGAAGCCATACTCGAGGTCCATTGTGGGTGCTTCCCTAGAGGTGATCCAGAAGAAGA

upper sequence: AT3G53020.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA19G37370.2 (Glycine max), 3'ss of exon 3
------------------------------------------------gtaaaaaaaa----------aactcagtaatt-tggatctgttttgttgtttgtactttgttttttttcattgat--cctgatttg--ttaacattctaaaactctgtttcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCATACTCAAGGTCCATTGTTGGTGCTACCTTGGAAGTAATTCAGAAGAAGA
                                                || |||| |           ||||  || ||| |  || |     | |  | || ||  ||  || | || || |  | |||||||  ||   ||| |     |   | |  | | |||||    || ||||| ||||||| ||  |||||||||||  |||| ||||| ||||| ||||||||||||||||| |||||||||||||| ||||| ||||
gtgattatttaattgtattattttaaagatgaaacaataaaccaatgagtgaaaatattgttgcctttaacttggttattctacatataaacaggttatggtgctaagtaattctgcaatggttgcatgatttgaattttgattgtttgtgtgcatgtgatatctagGACATTGCTCAAGAAGCTGTGAGGAAGAGGAGACGTGCTGCCAAAAAGCCTTACTCTAGGTCCATTGTTGGTGCGACCTTGGAAGTAATCCAGAAAAAGA

upper sequence: AT3G53020.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA10G07680.1 (Glycine max), 3'ss of exon 3
gtaaaaaaaaaactcagtaatttgg-atctgttttgttgtttgtacttt--gttttttttcattgatc-ctgatttgttaac--attctaaaactctgtttcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCATACTCAAGGTCCATTGTTGGTGCTACCTTGGAAGTAATTCAGAAGAAGA
           |||  || |||    || |     | ||  | | ||    ||  || | ||||| |  ||    | ||||   ||| |     |   | | || | |||||    || ||||| |||||||||| ||| ||||||||  |||| ||||| ||||| ||||||||||| ||||| || |||||||| || ||||| ||||
----------tacttggttattcctcatataaacaggtgactttgctacaagtaattctgcattgtttgcttgcattttaattgattgtttgtgttcatgtgttgtgtagGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCTTACTCCAGGTCCATTGTCGGTGCCACTTTGGAAGTTATCCAGAAAAAGA

upper sequence: AT3G53020.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA13G21520.1 (Glycine max), 3'ss of exon 3
gtaaaaaaaaaactcagtaatttgg-atctgttttgttgtttgtacttt--gttttttttcattgatc-ctgatttgttaac---attctaaaactctgtttcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCATACTCAAGGTCCATTGTTGGTGCTACCTTGGAAGTAATTCAGAAGAAGA
           |||  || |||    |  |      |||  ||| || |  ||   | | || || |  |     | ||||    ||| |     |   | |  | ||||||||   || ||||| ||||||||||  || |||||||| ||||| || || ||||| ||||| |||||||||||||| || ||||| || ||||| ||||
-----------acttggttattcctcacataaacacttgactgtgctataagtaaatatccaatggttgcatgcattttaatttgattgtttgtgtgcatgtgatgtatagGATATTGCTCAAGAAGCTGTGAAGAAGAGAAGACGTGCTACCAAAAAACCTTACTCTAGGTCTATTGTTGGTGCTACTTTAGAAGTTATCCAGAAAAAGA

upper sequence: AT3G53020.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA03G34700.1 (Glycine max), 3'ss of exon 3
gtaaaaaaaaaactcagtaatttggatctgttttgttgtttgt-actttgttttttttcattgatcctg---atttgttaacattctaaaactctgtttcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCATACTCAAGGTCCATTGTTGGTGCTACCTTGGAAGTAATTCAGAAGAAGA
        |    |   |  | || || |  | ||| |    |  ||| ||  |  | || || |       |||||     ||| |     |   | || | | |||||    || ||||| ||||||||||  |||||||| ||  |||| ||||| ||||| ||||||||||||||||| ||  ||||||| || ||||| ||||
--------attggttgtttgtgtgcatgtcatgtgtaggacattgcttagtaatactgcaatggttgcatgcatttgaattgattgtttgtgtgcatgtcatgtgtagGACATTGCTCAAGAAGCTGTGAAGAAGAGGAGACGCGCTGCCAAAAAGCCTTACTCTAGGTCCATTGTTGGTGCCACTCTGGAAGTTATCCAGAAAAAGA

upper sequence: AT3G53020.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv13s0074g00140.t01 (Vitis vinifera), 3'ss of exon 3
----------gtaaaaaaaaaactcagtaatttggatctgttttgttgtttgtactttgttttttttcattgatcctgatttgttaacattctaaaactctgtttcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCATACTCAAGGTCCATTGTTGGTGCTACCTTGGAAGTAATTCAGAAGAAGA
           |  ||  | |  ||| | |||   |     |||| | | || |  | || |  | |  |||  | | |    ||  | |  |  | || | |     | | ||||   |||    |||||||||||||  ||| | ||||||||||||||||||| ||| || ||||| |||||| |||||||||| |  || ||||||| ||
gtggaatgtcttttaatgatacttcattcattgaaa---agtttgctatatgcagct-gtatcatgtggttggacattacaaattttcttctttcatctatatgcaactcacagGACATAGCTGCGGAGGCTGTGAAGAAGAGGCGTCGTGCCACCAAGAAGCCATTCTCCAGATCCATAGTTGGTACTACCTTGGAGGCGATACAGAAGAGGA

upper sequence: AT3G53020.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv08s0007g04210.t01 (Vitis vinifera), 3'ss of exon 3
gtaaaaaaaaaactcagtaatttggatctgttttgttgtttgtactttgtttttt-ttcattgatcctgatttgttaacattctaaaactctgtttcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCATACTCAAGGTCCATTGTTGGTGCTACCTTGGAAGTAATTCAGAAGAAGA
 |  | |      |  || | ||   ||||        | |  ||| ||  || | ||  |||    | |||||||   | ||   || |  |||  |  |  |||||   || ||||||||||| ||||  ||| | ||||||||||| ||||| ||||| ||||||||||| |||||||| ||||| || || |||||||  |
-tgtatatgtgttttggtcactt---tctggaaaagaatatccactatggattatgtttgttgggagttatttgttttgagtcactaattgggttaatgct-cagGATATTGCTCAAGAGGCTGTAAAGAAGAGGCGTCGTGCCACCAAAAAGCCCTACTCTAGGTCCATTGTGGGTGCTACATTGGAGGTTATCCAGAAGAGAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164225881|gb|ES070149.1|ES070149
EST:     GCAACACAAGAAG                         GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
genomic: GCAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
EST: gi|124705054|gb|EH796456.1|EH796456
EST:     AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAG                         GATGCAGCACAA
genomic: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAA
EST: gi|116472836|gb|EG515428.1|EG515428
EST:     AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAG                         GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
genomic: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
EST: gi|152038275|gb|BP812779.2|BP812779
EST:     AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAG                         GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGC-A
genomic: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
EST: gi|116410667|gb|EG453259.1|EG453259
EST:     AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAG                         GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
genomic: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
EST: gi|116452319|gb|EG494911.1|EG494911
EST:     AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAG                         GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
genomic: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
EST: gi|86078101|gb|DR373858.1|DR373858
EST:     AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAG                         GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
genomic: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
EST: gi|86082625|gb|DR378384.1|DR378384
EST:     GCCATCCAAGCTTGCATGGACTTGCCATGTACAGAAAGCAACACAAGAAG                         GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
genomic: GCCATCCAAGCTTGCATGGAC-TGCCATGTACAGAAAGCAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
EST: gi|152035093|gb|BP844349.2|BP844349
EST:     AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAG                         GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCCACCAAGAAGCC
genomic: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCC-ACCAAGAAGCC
EST: gi|124798337|gb|EH888016.1|EH888016
EST:     AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAG                         GATGCAGCACAAG
genomic: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAG
EST: gi|125022493|gb|EL094762.1|EL094762
EST:     TGGACTGCCATGTACAGAAAGCAACACAAGAAG                         GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
genomic: TGGACTGCCATGTACAGAAAGCAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
EST: gi|116483020|gb|EG525612.1|EG525612
EST:     AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAG                         GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
genomic: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
EST: gi|164235477|gb|ES093220.1|ES093220
EST:     GAAAGCAACACAAGAAG                         GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
genomic: GAAAGCAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
EST: gi|116472837|gb|EG515429.1|EG515429
EST:     AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAG                         GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
genomic: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
EST: gi|116483018|gb|EG525610.1|EG525610
EST:     AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAG                         GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
genomic: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
EST: gi|125012334|gb|EL084603.1|EL084603
EST:     AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAG                         GATGCAGCACAAGAGGCTGTGAAGAGA
genomic: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGA
EST: gi|164081957|gb|ES129266.1|ES129266
EST:     AAAGCAACACAAGAAGG                         GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCC
genomic: AAAGCAACACAAGAA-Ggtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCC
EST: gi|164027455|gb|ES146678.1|ES146678
EST:     CCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAG                         GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACC
genomic: CCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACC
EST: gi|125319201|gb|EL333286.1|EL333286
EST:     CAACACAAGAAG                         GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
genomic: CAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
EST: gi|152038145|gb|BP809467.2|BP809467
EST:     GCCATCCAAGGTTGCATGGACTGCCATGTACAGAAAGCAACACCAAGAAG                         GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCAGCAAGAAGCC
genomic: GCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACAC-AAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCC
EST: gi|86081830|gb|DR377589.1|DR377589
EST:     AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAG                         GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
genomic: AGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
EST: gi|125284848|gb|EL298933.1|EL298933
EST:     CAACACAAGAAG                         GATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA
genomic: CAACACAAGAAGgtaaaaaaaa ... tcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttttcattgatcctgatttgttaacattctaaaactctgtttcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCATACTCAAGGTCCATTGTTGGTGCTACCTTGGAAGTAATTCAGAAGAAGA
                              ttctaaa  putative branch site (score: 2)
                                      ctctgtttcttttat  CT-rich tract
                        ttaacattctaaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaaaaaaaaactcagtaatttggatctgttttgttgtttgtactttgttttttttcattgatcctgatttgttaacattctaaaactctgtttcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCATACTCAAGGTCCATTGTTGGTGCTACCTTGGAAGTAATTCAGAAGAAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG