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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgcctttttgtaactaattggctcttacacgtcttcccaagatcttgttggttttaagttgccatatattctccattcctcgaggtgttcttaaaatgagtctacttcaatttcagATAGGCAAAGGTTCCCGTGGAGACGTGACTATACTCCCAACTCTTGTCGTGAACAACAGACAATACAGAG

Basic information

species Arabidopsis thaliana
transcript AT3G52850.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125264348|gb|EL278433.1|EL278433
EST:     GATGTGGAGAACCCAGTTCTTAAAGCAGAGCAGGAGTCACAG                         ATAGGCAAAGGTTCCCGTGGAGACGTGACTATACTCCCAACTCTTGTCGCG
genomic: GATGTGGAGAACCCAGTTCTTAAAGCAGAGCAGGAGTCACAGgtttgccttt ... tcaatttcagATAGGCAAAGGTTCCCGTGGAGACGTGACTATACTCCCAACTCTTGTCGTG
EST: gi|124723100|gb|EH814502.1|EH814502
EST:     CTGAAGCAGATGTGGAGAACCCAGTTCTTAAAGCAGAGCAGGAGTCACAG                         ATAGGCAAAGGTTCCCGTGGAGACGTGACTATACTCCCAACTCT
genomic: CTGAAGCAGATGTGGAGAACCCAGTTCTTAAAGCAGAGCAGGAGTCACAGgtttgccttt ... tcaatttcagATAGGCAAAGGTTCCCGTGGAGACGTGACTATACTCCCAACTCT
EST: gi|164054780|gb|ES112207.1|ES112207
EST:     CCCAGTTCTTAAAGCAGAGCAGGAGTCACAG                         ATAGGCAAAGGTTCCCGTGGAGACGTGACTATACTCCCAACTCTTGTCGTG
genomic: CCCAGTTCTTAAAGCAGAGCAGGAGTCACAGgtttgccttt ... tcaatttcagATAGGCAAAGGTTCCCGTGGAGACGTGACTATACTCCCAACTCTTGTCGTG
EST: gi|125101831|gb|EL156824.1|EL156824
EST:     CTGAAGCAGATGTGGAGAACCCAGTTCTTAAAGCAGAGCAGGAGTCACAG                         ATAGGCAAAGGTTCCCGTGGAGACGTGACTATACTCCCAA
genomic: CTGAAGCAGATGTGGAGAACCCAGTTCTTAAAGCAGAGCAGGAGTCACAGgtttgccttt ... tcaatttcagATAGGCAAAGGTTCCCGTGGAGACGTGACTATACTCCCAA
EST: gi|86037689|gb|DR333444.1|DR333444
EST:     CTGAAGCAGATGTGGAGAACCCAGTTCTTAAAGCAGAGCAGGAGTCACAG                         ATAGGCAAAGGTTCCCGTGGAGACGTGACTATACTCCCAACTCTTGTCGTG
genomic: CTGAAGCAGATGTGGAGAACCCAGTTCTTAAAGCAGAGCAGGAGTCACAGgtttgccttt ... tcaatttcagATAGGCAAAGGTTCCCGTGGAGACGTGACTATACTCCCAACTCTTGTCGTG
EST: gi|86037688|gb|DR333443.1|DR333443
EST:     CTGAAGCAGATGTGGAGAACCCAGTTCTTAAAGCAGAGCAGGAGTCACAG                         ATAGGCAAAGGTTCCCGTGGAGACGTGACTATACTCCCAACTCTTGTCGTG
genomic: CTGAAGCAGATGTGGAGAACCCAGTTCTTAAAGCAGAGCAGGAGTCACAGgtttgccttt ... tcaatttcagATAGGCAAAGGTTCCCGTGGAGACGTGACTATACTCCCAACTCTTGTCGTG
EST: gi|86037687|gb|DR333442.1|DR333442
EST:     CTGAAGCAGATGTGGAGAACCCAGTTCTTAAAGCAGAGCAGGAGTCACAG                         ATAGGCAAAGGTTCCCGTGGAGACGTGACTATACTCCCAACTCTTGTCGTG
genomic: CTGAAGCAGATGTGGAGAACCCAGTTCTTAAAGCAGAGCAGGAGTCACAGgtttgccttt ... tcaatttcagATAGGCAAAGGTTCCCGTGGAGACGTGACTATACTCCCAACTCTTGTCGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatatattctccattcctcgaggtgttcttaaaatgagtctacttcaatttcagATAGGCAAAGGTTCCCGTGGAGACGTGACTATACTCCCAACTCTTGTCGTGAACAACAGACAATACAGAG
                                       tctacttc  CT-rich tract
                          ttcttaaaat  TA-rich tract