Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaatagctgagacactcgagacttttttacaattttgacaggtcttttcaattgacatcgtttttgttctcttgtgccatgtttcatgctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGC

Basic information

species Arabidopsis thaliana
transcript AT3G52300.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86024149|gb|DR319902.1|DR319902
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024151|gb|DR319904.1|DR319904
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86078461|gb|DR374218.1|DR374218
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACA
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACA
EST: gi|86024108|gb|DR319861.1|DR319861
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024111|gb|DR319864.1|DR319864
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024139|gb|DR319892.1|DR319892
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCG
EST: gi|86024104|gb|DR319857.1|DR319857
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|164078602|gb|ES015360.1|ES015360
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAG
EST: gi|86024106|gb|DR319859.1|DR319859
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024098|gb|DR319851.1|DR319851
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAAC
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAAC
EST: gi|86024119|gb|DR319872.1|DR319872
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024133|gb|DR319886.1|DR319886
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024097|gb|DR319850.1|DR319850
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCA-A-CAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024140|gb|DR319893.1|DR319893
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024152|gb|DR319905.1|DR319905
EST:     GTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATCGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAAC
genomic: GTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGAT-GCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAAC
EST: gi|86024100|gb|DR319853.1|DR319853
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAAC
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAAC
EST: gi|86078506|gb|DR374263.1|DR374263
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024117|gb|DR319870.1|DR319870
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024114|gb|DR319867.1|DR319867
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024123|gb|DR319876.1|DR319876
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|125160149|gb|EL187888.1|EL187888
EST:     GTACGTTGACAAAGTTAACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAG
genomic: GTACGTTGACAAAGTT-ACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAG
EST: gi|86024118|gb|DR319871.1|DR319871
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86081814|gb|DR377573.1|DR377573
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGWACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024124|gb|DR319877.1|DR319877
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024144|gb|DR319897.1|DR319897
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024116|gb|DR319869.1|DR319869
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGA-CTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024150|gb|DR319903.1|DR319903
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|124786890|gb|EH876569.1|EH876569
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTC
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTC
EST: gi|86024142|gb|DR319895.1|DR319895
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAATTCGCTCAAGGAGTCTG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTG
EST: gi|86024105|gb|DR319858.1|DR319858
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024125|gb|DR319878.1|DR319878
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAAGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024101|gb|DR319854.1|DR319854
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024102|gb|DR319855.1|DR319855
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAAACG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAA-CG
EST: gi|125295947|gb|EL310032.1|EL310032
EST:     AGTACGTTGACAAAGTCACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGC
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGC
EST: gi|86024099|gb|DR319852.1|DR319852
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024128|gb|DR319881.1|DR319881
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024126|gb|DR319879.1|DR319879
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAA
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAA
EST: gi|86024143|gb|DR319896.1|DR319896
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|125300178|gb|EL314263.1|EL314263
EST:     GTACGTTGACAAAGTTACTCCTGAATACTAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: GTACGTTGACAAAGTTACTCCTGAATAC-AAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024109|gb|DR319862.1|DR319862
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024153|gb|DR319906.1|DR319906
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024121|gb|DR319874.1|DR319874
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024155|gb|DR319908.1|DR319908
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTCGGTGGAACTGAAAGAAGCAGAACAG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTT-GGTGGAACTGAAAGAAGCAGAACAG
EST: gi|124773206|gb|EH863335.1|EH863335
EST:     GTACGTTGACAAAGTTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAG
genomic: GTACGTTGACAAAG-TTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAG
EST: gi|86024136|gb|DR319889.1|DR319889
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|124992115|gb|EL064384.1|EL064384
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCG
EST: gi|86024137|gb|DR319890.1|DR319890
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024148|gb|DR319901.1|DR319901
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAAC
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAAC
EST: gi|125187605|gb|EL202559.1|EL202559
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAG
EST: gi|86024129|gb|DR319882.1|DR319882
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|301502222|gb|HO207762.1|HO207762
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024145|gb|DR319898.1|DR319898
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTG
EST: gi|124762238|gb|EH852368.1|EH852368
EST:     AAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024110|gb|DR319863.1|DR319863
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024157|gb|DR319910.1|DR319910
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCMGAACAGAAATCGCTCAAGGAGTCTGAAC
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAAC
EST: gi|86024154|gb|DR319907.1|DR319907
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAG
EST: gi|86024135|gb|DR319888.1|DR319888
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAATCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86082095|gb|DR377854.1|DR377854
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|164229752|gb|ES068205.1|ES068205
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTC
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTC
EST: gi|86024158|gb|DR319911.1|DR319911
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCA-A-CAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024130|gb|DR319883.1|DR319883
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTR                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTRAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024103|gb|DR319856.1|DR319856
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024141|gb|DR319894.1|DR319894
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
EST: gi|86024120|gb|DR319873.1|DR319873
EST:     AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGA
genomic: AGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGA
EST: gi|124933131|gb|EL010322.1|EL010322
EST:     CAAGCCAAAGTTTGATGCTTTG                         TTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG
genomic: CAAGCCAAAGTTTGATGCTTTGgtgagtaata ... ctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttcaattgacatcgtttttgttctcttgtgccatgtttcatgctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGC
      aattgac  putative branch site (score: 3)
                 tttttgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtaatagctgagacactcgagacttttttacaattttgacaggtcttttcaattgacatcgtttttgttctcttgtgccatgtttcatgctatatctagTTGGTGGAACTGAAAGAAGCAGAACAGAAATCGCTCAAGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA