Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atcttatatcttttgcttgtttattgacaaacttatcttcttgttctccttaattatgtatttcagtcactgattcattctcatgtgtctttcatttcagTTCTAACTTACAGGCACGAGTTAGGAATGAACTACAACTTTATTCGTCCAGATCTAATTGTTGGATCCTGCTTACAG

Basic information

species Arabidopsis thaliana
transcript AT3G52180.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G52180.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv00s0250g00020.t01 (Vitis vinifera), 3'ss of exon 4
atcttatatcttttgcttgtttattgacaaacttatcttcttgttct----ccttaattatgtatttcagtcactgattcattctcatgtgtctttcatttcagTTCTAACTTACAGGCACGAGTTAGGAATGAACTACAACTTTATTCGTCCAGATCTAATTGTTGGATCCTGCTTACAG
| ||||       ||||  || |  |      || |  ||||| | |     | |   ||||  |||   | ||   |||||||| ||||    |    | ||||  | ||||| ||||| ||| |||||||||| |||||||| |||||||||||  | ||||| || || ||| |||||
aacttaatgggaatgctctttaaaagtttccttttttgtcttgctttgtgttcatgcatatggttttagctaaccatttcattcttatgt----tctgatacagTATTGACTTATAGGCATGAGCTAGGAATGAATTACAACTTCATTCGTCCAGACTTGATTGTGGGGTCTTGCCTACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctccttaattatgtatttcagtcactgattcattctcatgtgtctttcatttcagTTCTAACTTACAGGCACGAGTTAGGAATGAACTACAACTTTATTCGTCCAGATCTAATTGTTGGATCCTGCTTACAG
                      cactgat  putative branch site (score: 3)
                                          tctttcatttc  putative PPT
     taattatgtatttca  TA-rich tract