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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgattagcaaaggcatatataaacaatcacatatctccgcatgagtgatcttcagcaagagtgatcaaagtttccttagatcttaaagaaacctcatggattctgtttcgaaattacagGTACGGCACAAAAGCAGCAGAGGCTACTAACGAAGGGCTAGACGCAGCGGGACATGCATTTGGAACGGCATGGGTTGCTTTCAAGATTCGAAAGGCATTT

Basic information

species Arabidopsis thaliana
transcript AT3G51250.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116406159|gb|EG448751.1|EG448751
EST:     AACGTAATGTCGACTTCATCAACTGTCACAACAGAATTAGTCAATCACAG                         GTACGGCACAAAAGCAGCAGAGGCTACTAACGAAGGGCTAGACGCAGCGGG
genomic: AACGTAATGTCGACTTCATCAACTGTCACAACAGAATTAGTCAATCACAGgtattgatta ... gaaattacagGTACGGCACAAAAGCAGCAGAGGCTACTAACGAAGGGCTAGACGCAGCGGG
EST: gi|124724345|gb|EH815747.1|EH815747
EST:     TCGACTTCATCAACTGTCACAACAGAATTAGTCAATCACAG                         GTACGGCACAAAAGCAGCAGAGGCTACTAACGAAGGGCTAGACGCAGCGGG
genomic: TCGACTTCATCAACTGTCACAACAGAATTAGTCAATCACAGgtattgatta ... gaaattacagGTACGGCACAAAAGCAGCAGAGGCTACTAACGAAGGGCTAGACGCAGCGGG
EST: gi|124753300|gb|EH843430.1|EH843430
EST:     AACGTAATGTCGACTTCATCAACTGTCACAACAGAATTAGTCAATCACAG                         GTACGGCACAAAAGCAGCAGAGGCTACTAACGAAGGG
genomic: AACGTAATGTCGACTTCATCAACTGTCACAACAGAATTAGTCAATCACAGgtattgatta ... gaaattacagGTACGGCACAAAAGCAGCAGAGGCTACTAACGAAGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaaagtttccttagatcttaaagaaacctcatggattctgtttcgaaattacagGTACGGCACAAAAGCAGCAGAGGCTACTAACGAAGGGCTAGACGCAGCGGGACATGCATTTGGAACGGCATGGGTTGCTTTCAAGATTCGAAAGGCATTT
                  ttaaagaaa  TA-rich tract