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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgtgttttcaaacgtcaaattgttggaaagccgatagaacgaatagcgttgctactcttttgaccttttatagtgacaccatgattccgaaagattgttgaaagaagtgtattatgtatagGACCACCATTTCTCTTTGCTGCAACACGAGAATGAGAAACTCCGCAATGACATAGAGCGAATCCGCTCTGATATAAG

Basic information

species Arabidopsis thaliana
transcript AT3G51090.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116476183|gb|EG518775.1|EG518775
EST:     CGCAGGAATCAAACTTATCCAAGTTCAAAAGTGAAATTAATAGTTCACTG                         GACCACCATTTCTCTTTGCTGCAACACGAGAATGAGAAACTCCGCAATGAC
genomic: CGCAGGAATCAAACTTATCCAAGTTCAAAAGTGAAATTAATAGTTCACTGgtaagttgtg ... ttatgtatagGACCACCATTTCTCTTTGCTGCAACACGAGAATGAGAAACTCCGCAATGAC
EST: gi|116476184|gb|EG518776.1|EG518776
EST:     CGCAGGAATCAAACTTATCCAAGTTCAAAAGTGAAATTAATAGTTCACTG                         GACCACCATTTCTCTTTGCTGCAACACGAGAATGAGAAACTCCGCAATGAC
genomic: CGCAGGAATCAAACTTATCCAAGTTCAAAAGTGAAATTAATAGTTCACTGgtaagttgtg ... ttatgtatagGACCACCATTTCTCTTTGCTGCAACACGAGAATGAGAAACTCCGCAATGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatagtgacaccatgattccgaaagattgttgaaagaagtgtattatgtatagGACCACCATTTCTCTTTGCTGCAACACGAGAATGAGAAACTCCGCAATGACATAGAGCGAATCCGCTCTGATATAAG
                                           tattatgtata  TA-rich tract