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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatgacatcttcatatcattcttgatttgtatctttgtattgttgtcatacaatcgctgaagatgtctcgagaatctttaaaatgctttgaggcaaatctatactaacattcaagtcagtgtaattgctgaaacaaaattaaagtctcacacttttgttattgtggttttcaaaatgtgcagATTGGCTTGAGATGCCAGGTTCTCTGATCCTGCTACTGGTAGTTTCTCCACACTTCCTTGCTCACCATATACGTGGAACCTGGATAGGCACTGTAATCAG

Basic information

species Arabidopsis thaliana
transcript AT3G50830.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125012969|gb|EL085238.1|EL085238
EST:     TGCTTTCGTTGCGGTTGTTCTCAGACTTTTCTTCCCTAAGCATTTCCCAG                         ATTGGCTTGAGATGCCAGGTTCTCTGATCCTGCTACTGGTAGTTTCTCCAC
genomic: TGCTTTCGTTGCGGTTGTTCTCAGACTTTTCTTCCCTAAGCATTTCCCAGgtgatgacat ... aaatgtgcagATTGGCTTGAGATGCCAGGTTCTCTGATCCTGCTACTGGTAGTTTCTCCAC
EST: gi|125274373|gb|EL288458.1|EL288458
EST:     GGTTGTTCTCANACTTTTCTTCCCTAAGCATTTCCCAG                         ATTGGCTTGAGATGCCAGGTTCTCTGATCCTGCTACTGGTAGTTTCTCCAC
genomic: GGTTGTTCTCAGACTTTTCTTCCCTAAGCATTTCCCAGgtgatgacat ... aaatgtgcagATTGGCTTGAGATGCCAGGTTCTCTGATCCTGCTACTGGTAGTTTCTCCAC
EST: gi|301502698|gb|HO208238.1|HO208238
EST:     TGCTTTCGTTGCGGTTGTTCTCAGACTTTTCTTCCCTAAGCATTTCCCAG                         ATTGGCTTGAGATGCCAGGTTCTCTGATCCTGCTACTGGTAGTTTCTCCAC
genomic: TGCTTTCGTTGCGGTTGTTCTCAGACTTTTCTTCCCTAAGCATTTCCCAGgtgatgacat ... aaatgtgcagATTGGCTTGAGATGCCAGGTTCTCTGATCCTGCTACTGGTAGTTTCTCCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgaaacaaaattaaagtctcacacttttgttattgtggttttcaaaatgtgcagATTGGCTTGAGATGCCAGGTTCTCTGATCCTGCTACTGGTAGTTTCTCCACACTTCCTTGCTCACCATATACGTGGAACCTGGATAGGCACTGTAATCAG
                gtctcac  putative branch site (score: 3)
     acaaaattaaa  TA-rich tract