1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaacgccacgaaaaccaaaagtttgtgcagtttttgtttctcttctgttcaagctaatgttgtatcttcgcatgtgatatgactcttcagCGAATATGGGCAAAACCTGTCTTAGACCGTGTGGGTCTTATAATCGAAATATTTAATGCTCATGCGCATACAAAGGAAGCAAAACTACAG
species | Arabidopsis thaliana |
transcript | AT3G49725.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGTTTTCGTAAACGCCATTTTGACCGCTATCCAACAACGGAATTTAGAG CGAATATGGGCAAAACCTGTCTTAEST: gi|116481836|gb|EG524428.1|EG524428
genomic: CTGTTTTCGTAAACGCCATTTTGACCGCTATCCAACAACGGAATTTAGAGgtaacgccac ... gactcttcagCGAATATGGGCAAAACCTGTCTTA
EST: CTGTTTTCGTAAACGCCATTTTGACCGCTATCCAACAACGGAATTTAGAG CGAATATGGGCAAAACCTGTCTTAGACCGTGTGGGTCTTATAATCGAAATA
genomic: CTGTTTTCGTAAACGCCATTTTGACCGCTATCCAACAACGGAATTTAGAGgtaacgccac ... gactcttcagCGAATATGGGCAAAACCTGTCTTAGACCGTGTGGGTCTTATAATCGAAATA
gtttctcttctgttcaagctaatgttgtatcttcgcatgtgatatgactcttcagCGAATATGGGCAAAACCTGTCTTAGACCGTGTGGGTCTTATAATCGAAATATTTAATGCTCATGCGCATACAAAGGAAGCAAAACTACAG
agctaat putative branch site (score: 3)
ctcttc putative PPT
taatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacgccacgaaaaccaaaagtttgtgcagtttttgtttctcttctgttcaagctaatgttgtatcttcgcatgtgatatgactcttcagCGAATATGGGCAAAACCTGTCTTAGACCGTGTGGGTCTTATAATCGAAATATTTAATGCTCATGCGCATACAAAGGAAGCAAAACTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA