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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatcaaaactagtcctttttctgttttccaccttgaattttggcatacttaggttaaagaggtaactttgtgttgcatatatatggaggatgattctgtgatgtctatatcttactgtagAGGTGGTCGATATCCGGAAGCAGAAGCTAAGCGTATTCTTGTACAGATTTTATCTGCAACTGCTTTTTTCCATCTTCAAGGTGTTGTGCACCGTGATCTG

Basic information

species Arabidopsis thaliana
transcript AT3G49370.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G49370.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv16s0098g01140.t01 (Vitis vinifera), 3'ss of exon 3
gtaaaatcaaaactagtcctttttctgttttccaccttgaattttggcatacttaggttaaagaggtaactttgtgttgcatatatatggaggatgattctgtgatgtctatatcttactgtagAGGTGGTCGATATCCGGAAGCAGAAGCTAAGCGTATTCTTGTACAGATTTTATCTGCAACTGCTTTTTTCCATCTTCAAGGTGTTGTGCACCGTGATCTG
                       |    ||     ||| | |||     ||||   | ||| |   ||  |||    |    | ||||         |  |    ||  | | || |  |  ||||||||  ||||    |||| ||| |||||   |||| |||| || ||| ||  ||    ||| ||||  ||||| ||||||||||||||||||||||| 
----------------------gtaaacttgaatgctttattttctttgtactagtggtaacgcc-tagttttactatcagaaaatattatttgaagtaatacattgcat-tctcctgttacagAGGTGGAAGATACAGAGAAGAAGATGCTAAAGCTATTGTTGTGCAAATTCTAAATGTGGTTGCCTTTTGTCATCTCCAAGGTGTTGTGCACCGTGATCTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgtgttgcatatatatggaggatgattctgtgatgtctatatcttactgtagAGGTGGTCGATATCCGGAAGCAGAAGCTAAGCGTATTCTTGTACAGATTTTATCTGCAACTGCTTTTTTCCATCTTCAAGGTGTTGTGCACCGTGATCTG
                                           atcttac  putative branch site (score: 3)
                                            tcttact  CT-rich tract
           atatatat  TA-rich tract