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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaaaaaagctccatactcttcaccacaacatcaaacttgtggatacacaacacagagctttttatatgatctactgacttggtttgattctttcatgtgctacagGCAGTAAAGAGGCTAGGGTTATGGGGTATGTTAACCCGTGGCCTTCCTCTTCGCATTTTCATGATAGGAACACTCACTGGAGCGCAGTGGGTTATCTATG

Basic information

species Arabidopsis thaliana
transcript AT3G48850.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G48850.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os09g28160.1 (Oryza sativa), 3'ss of exon 3
gtaagtaaaaaagctccata-ctcttcaccacaacatcaaacttg--tggatacacaacacagagctttttatatgatctactgacttggtttgattctttcatgtgctacagGCAGTAAAGAGGCTAGGGTTATGGGGTATGTTAACCCGTGGCCTTCCTCTTCGCATTTTCATGATAGGAACACTCACTGGAGCGCAGTGGGTTATCTATG
||||||    |  ||  | | |    || |        | |||||  | ||| |      |  |  | |   | |  | |  |   |||   ||| |  ||  |    | ||||| || ||||  || ||  | |||||  | || ||||| |||||||||||||||||  ||||||| || ||||| |||||| | |||||||| |||||||
gtaagtctgcaccctgtagaacggcacagccgggagctatacttgacttgatgcgttttgccaatgtgtgattgttttgtgttcgtttg--ctgaattcttatttcttttcagGCTGTCAAGAACCTTGGCCTCTGGGGCCTTTTCACCCGCGGCCTTCCTCTTCGCATCCTCATGATCGGTACACTGACTGGAACTCAGTGGGTGATCTATG

upper sequence: AT3G48850.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: EFJ31007 (Selaginella moellendorffii), 3'ss of exon 4
gtaagtaaaaaagctccatactcttcaccacaacatcaaacttgtggatacacaacacagagctttttatatgatctactgacttggtttgattctttcatgtgctacagGCAGTAAAGAGGCTAGGGTTATGGGGTATGTTAACCCGTGGCCTTCCTCTTCGCATTTTCATGATAGGAACACTCACTGGAGCGCAGTGGGTTATCTATG
                                          | || || |      | | | | ||| |      || |    |   |      |||  | |||| ||||| || |||||  | ||  |   || | |  | ||||| || || || || || ||  | ||||| ||||| |||||||||||||||||||| ||||| |
-----------------------------------------gtatgtatccttgtttcggtggtgtttctcgcgcttattaggctaaatgctcgttttattttgctccagGCCGTCAAGAGCATGGGCCTGGTGGCTCTCGTCACCCGGGGGCTACCGCTGCGTATCGTGATGATTGGAACTCTCACTGGAGCGCAGTGGGTAATCTACG

upper sequence: AT3G48850.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: EFJ34706 (Selaginella moellendorffii), 3'ss of exon 4
gtaagtaaaaaagctccatactcttcaccacaacatcaaacttgtggatacacaacacagagctttttatatgatctactgacttggtttgattctttcatgtgctacagGCAGTAAAGAGGCTAGGGTTATGGGGTATGTTAACCCGTGGCCTTCCTCTTCGCATTTTCATGATAGGAACACTCACTGGAGCGCAGTGGGTTATCTATG
                                          | || || |      | | | | ||| |      || |    |   |      |||  | |||| ||||| || |||||  | ||  |   || | |  | ||||| || || || || || ||  | ||||| ||||| |||||||||||||||||||| ||||| |
-----------------------------------------gtatgtatccttgtttccgtggtgtttctcgcgcttattaggctaaatgctcgttttattttgctccagGCCGTCAAGAGCATGGGCCTGGTGGCTCTCGTCACCCGGGGGCTACCGCTGCGTATCGTGATGATTGGAACTCTCACTGGAGCGCAGTGGGTAATCTACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacagagctttttatatgatctactgacttggtttgattctttcatgtgctacagGCAGTAAAGAGGCTAGGGTTATGGGGTATGTTAACCCGTGGCCTTCCTCTTCGCATTTTCATGATAGGAACACTCACTGGAGCGCAGTGGGTTATCTATG
                                     ttctttcat  CT-rich tract
        tttttatatgatcta  TA-rich tract