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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcgacttcttgtgctcatgtcgaatgtgctttgccgaatggtgttcttatactagcttgtttcttatttgatttctagGATGAAGATGGAAACAAGACAATAAATGAGTTTGTTCGTGAGCGTAAAATTGGATCTGGTAGTTATGGGAAAGTG

Basic information

species Arabidopsis thaliana
transcript AT3G45240.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G45240.3 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA11G20690.1 (Glycine max), 3'ss of exon 2
----------------gtatgcg---acttcttgtgctcatgtcgaatgtgctttgccgaatggtgttcttatactagcttgtttcttatttgatttctagGATGAAGATGGAAACAAGACAATAAATGAGTTTGTTCGTGAGCGTAAAATTGGATCTGGTAGTTATGGGAAAGTG
                |||| |    |   ||| |  |  ||  |||| |  |||  |  |     ||   |  || | |    | ||| ||   ||  |||||||| |||| |||||||  |||||||||| | |||||||| |||||||||| |||||||| ||||||||||||
atctgaatgttattttgtattcaagaaacacttctctttgtgatgaatatcttttctctcagaac-ttagaagtcttgttgaacttttagtttcctttcagGATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTGTAAAATTGGTTCTGGTAGCTATGGGAAAGTG

upper sequence: AT3G45240.3 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA12G07340.1 (Glycine max), 3'ss of exon 3
----------------gtatgcg---acttcttgtgctcatgtcgaatgtgctttgccgaatggtgttcttatactagcttgtttcttatttgatttctagGATGAAGATGGAAACAAGACAATAAATGAGTTTGTTCGTGAGCGTAAAATTGGATCTGGTAGTTATGGGAAAGTG
                |||| |    |   ||| |  |  | | |||| |  ||| ||  |     |    ||  ||  |    | ||||||   || ||||||||| |||| |||||||  |||||||||| | ||||||||  ||| ||||| |||||||| ||||||||||||
tattggaatgttatttgtattcaggaaacacttctctttgtattgaatatcttttccctcagaacttagaaatctta-ttgaacttttattttccttttagGATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTATAAGATTGGTTCTGGTAGCTATGGGAAAGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtgctttgccgaatggtgttcttatactagcttgtttcttatttgatttctagGATGAAGATGGAAACAAGACAATAAATGAGTTTGTTCGTGAGCGTAAAATTGGATCTGGTAGTTATGGGAAAGTG
                                          atttgat  putative branch site (score: 5)
                                cttgtttcttattt  CT-rich tract
                                    tttcttatttgattt  TA-rich tract