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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttagcttttgtgttagcatctataagttatattttcttgtttctaatcccacttctcttgatgttttcttatggcagTTACATGGAACATTACTTGCACATATTCGCAGTTTCTAGCACGGAAAACTCCGACTTGTTGTGTCTCACTCTCAGCCTTCTACAATGAAACTATAGTACC

Basic information

species Arabidopsis thaliana
transcript AT3G29810.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125274111|gb|EL288196.1|EL288196
EST:     GCCGAGTAGATTCATTTCCGCGGATAAACGAAGAAAGACTCAGTCTTTGC                         TTACATGGAAC
genomic: GCCGAGTAGATTCATTTCCGCGGATAAACGAAGAAAGACTCAGTCTTTGCgtaagtttag ... cttatggcagTTACATGGAAC
EST: gi|125202238|gb|EL217192.1|EL217192
EST:     GCCGAGTAGATTCATTTCCGCGGATAAACGAAGAAAGACTCAGTCTTTGC                         TTACATGGAACATTAC
genomic: GCCGAGTAGATTCATTTCCGCGGATAAACGAAGAAAGACTCAGTCTTTGCgtaagtttag ... cttatggcagTTACATGGAACATTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagttatattttcttgtttctaatcccacttctcttgatgttttcttatggcagTTACATGGAACATTACTTGCACATATTCGCAGTTTCTAGCACGGAAAACTCCGACTTGTTGTGTCTCACTCTCAGCCTTCTACAATGAAACTATAGTACC
                                       tgttttctt  CT-rich tract
     tatattttcttgttt  TA-rich tract