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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgctttctcatatatattcttctcatgtttcaagctttgttccgcgccatagtgatttcgattacaacacactttgcagGCCGGTCAGAACGATTTAATGAGAAAAGCTCAGATATTTATCTACACAAATGGTAATGAAAACCCTCCAACCGCAATTGACTTAGACAAATCTCTTCTCA

Basic information

species Arabidopsis thaliana
transcript AT3G29770.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86088312|gb|DR384071.1|DR384071
EST:     CAGCGATGTTAACAAATGGTCAAAGTACACTCGATATGTTCTCCTTGAAG                         GCCGGTCAGAACGATTTAATGAGAAAAGCTCAGATATTTATCTACACAAAT
genomic: CAGCGATGTTAACAAATGGTCAAAGTACACTCGATATGTTCTCCTTGAAGgtttgctttc ... cactttgcagGCCGGTCAGAACGATTTAATGAGAAAAGCTCAGATATTTATCTACACAAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtttcaagctttgttccgcgccatagtgatttcgattacaacacactttgcagGCCGGTCAGAACGATTTAATGAGAAAAGCTCAGATATTTATCTACACAAATGGTAATGAAAACCCTCCAACCGCAATTGACTTAGACAAATCTCTTCTCA
                                    attacaa  TA-rich tract