1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgattttctcacttccttttgtgattcttaactcttaatttccaaaaccatgatattgagtttgttccttggtttcttttggtgaaaaagAGAAAGAAGGAACAAACAGTTGTAGTGGAGTGCAAAGGCCATGATGCTGCTCGAATTAATGATGTCGAGCATGCTCACGG
species | Arabidopsis thaliana |
transcript | AT3G29280.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCCGCGGTGAGGATTATCGGTTGATCAAACTCACTATCATAGACTACAAT AGAAAGAAGGAACAWACAGTTGTAGTGGAGTGCAAAGGCCATGATGCTGCTEST: gi|164221820|gb|ES151470.1|ES151470
genomic: GCCGCGGTGAGGATTATCGGTTGATCAAACTCACTATCATAGACTACAATgtatgatttt ... ggtgaaaaagAGAAAGAAGGAACAAACAGTTGTAGTGGAGTGCAAAGGCCATGATGCTGCT
EST: TCGGTTGATCAAACTCACTATCATAGACTACAAT AGAAAGAAGGAACAAACAGTTGTAGCGGAGTGCAAAGGCCATGATGCTGCTEST: gi|163998973|gb|ES161623.1|ES161623
genomic: TCGGTTGATCAAACTCACTATCATAGACTACAATgtatgatttt ... ggtgaaaaagAGAAAGAAGGAACAAACAGTTGTAGTGGAGTGCAAAGGCCATGATGCTGCT
EST: CACTATCATAGACTACAAT AGAAAGAAGGAACAAACAGTTGTAGTGGAGTGCAAAGGCCATGATGCTGCT
genomic: CACTATCATAGACTACAATgtatgatttt ... ggtgaaaaagAGAAAGAAGGAACAAACAGTTGTAGTGGAGTGCAAAGGCCATGATGCTGCT
taatttccaaaaccatgatattgagtttgttccttggtttcttttggtgaaaaagAGAAAGAAGGAACAAACAGTTGTAGTGGAGTGCAAAGGCCATGATGCTGCTCGAATTAATGATGTCGAGCATGCTCACGG
tcttaat putative branch site (score: 3)
tttcttttg putative PPT
atgatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgattttctcacttccttttgtgattcttaactcttaatttccaaaaccatgatattgagtttgttccttggtttcttttggtgaaaaagAGAAAGAAGGAACAAACAGTTGTAGTGGAGTGCAAAGGCCATGATGCTGCTCGAATTAATGATGTCGAGCATGCTCACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT