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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatttacttggcgtttgttgatttgagagttatgcatttgtgttttggttctatgtttgagcttgagattgaagttttgttactttgtgttgtgatcttagATGATTGGTGTTTGGACCGTGTGTCTTTGGGAGCAAATGGGAAGGCCAGAGAGGGTTAATCTTGTTGAGCTAGGTCCAGGTCGGGGAACACTCATGGCCG

Basic information

species Arabidopsis thaliana
transcript AT3G28700.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G28700.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G086052_T03 (Zea mays), 3'ss of exon 3
---gtgatttacttggcgtttgttgatttgagagttatgcatttgtgttttggttctatgtttgagcttgagattgaagttttgttactttgtgttgtgatcttagATGATTGGTGTTTGGACCGTGTGTCTTTGGGAGCAAATGGGAAGGCCAGAGAGGGTTAATCTTGTTGAGCTAGGTCCAGGTCGGGGAACACTCATGGCCG
   ||      | |    | || |   ||       |   |     |  ||  |   ||   ||| |    |||||   |  || || |   | |  |   |  ||||||||||||| ||| |  |||| || |||||||||||||||| ||||| || ||| |||||  ||||||| || ||||| || ||||||||| |||| |
agcgttgcagccataagatgtgctctctttttttcaaactaacaaggcattaatgagattcatgaacc---gattg---tgctgctattgaatttatttggcacagATGATTGGTGTATGGGCAATGTGCCTCTGGGAGCAAATGGGAAAGCCAGCGAAGGTGAATCTGATTGAGCTTGGCCCAGGACGAGGAACACTCTTGGCTG

upper sequence: AT3G28700.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv14s0066g02600.t01 (Vitis vinifera), 3'ss of exon 3
--------------------------------------------------------------------------gtgatttactt--ggcgtttgttgatttgagagttatgcatttgtgttttggttcta--tgttt---gagcttgagattgaag--ttttgttactttgtgttgtgatc------ttagATGATTGGTGTTTGGACCGTGTGTCTTTGGGAGCAAATGGGAAGGCCAGAGAGGGTTAATCTTGTTGAGCTAGGTCCAGGTCGGGGAACACTCATGGCCG
                                                                            | |||| ||  | |     |   ||  |   |  |    |  || |||| ||||   |   |   ||| ||   | |  ||  | || | | |||   |  ||||       |||||||||||||||||||    ||||||| ||||||||||||||    |||   |  || || || |||||| | ||||| || || ||||| |||||||| |
gtaatttgattgctgttgaatgcttaattgttatattttcttataatttgttgagtagattcaaggagtaagggaagttttatttatgccaaagatctgttcaactttggtattctgttgctttgattctcactacctcaagagtttatcactagagaatgttttcatttttcttgctgattccacttttagATGATTGGTGTTTGGGTTATGTGTCTGTGGGAGCAAATGGGTCAACCAAGTAAAGTGAACCTAGTTGAGTTGGGTCCTGGACGAGGAACTCTCATGGCTG

upper sequence: AT3G28700.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: EFJ18779 (Selaginella moellendorffii), 3'ss of exon 1
gtgatttacttggcgtttgttgatttgagagttatgcatttgtgttttggttctatgtttgagcttgagattgaagttttgttactttgtgttgtgatcttagATGATTGGTGTTTGGACCGTGTGTCTTTGGGAGCAAATGGGAAGGCCAGAGAGGGTTAATCTTGTTGAGCTAGGTCCAGGTCGGGGAACACTCATGGCCG
                                   | ||| |     |  |||| ||  |      | |||  |||    |||  | |     ||     |||||||||||  | |||| |||| ||||||||||||||||||||| |||   ||   |  | ||||| || ||||| || ||||| || || ||||||   |
-----------------------------------gtattggaaagatt-ttctttgccttgcacggtgatcaaagccaagtttttct----cgt----ctagATGATTGGAATCTGGAGCGTGAGTCTTTGGGAGCAAATGGGAAAGCCCAGGAAACTCCAACTTGTAGAACTAGGACCGGGTCGAGGTACGCTCATGCAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttctatgtttgagcttgagattgaagttttgttactttgtgttgtgatcttagATGATTGGTGTTTGGACCGTGTGTCTTTGGGAGCAAATGGGAAGGCCAGAGAGGGTTAATCTTGTTGAGCTAGGTCCAGGTCGGGGAACACTCATGGCCG
                            ttttgtta  TA-rich tract