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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattacatttgcactttcgatttggagaaactactgttttacttggtggtatgtctacgggattcttttctgataatacttttgtcagGAATTGAATTGGTACTTGGAACTCGTGTTAAGTCCGTTGATGTGAGGAGGAAGACTCTTTTATCGAGCACAGGGGAGACTATAAGTTACAAATTCTTGAT

Basic information

species Arabidopsis thaliana
transcript AT3G27820.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124941070|gb|EL017462.1|EL017462
EST:     CCGAAATGGTACAAGGATCATG                         GAATTGAATTGGTACTTGGAACTCGTGTTAAGTCCGTTGATGTGAGGAGGA
genomic: CCGAAATGGTACAAGGATCATGgtaattacat ... cttttgtcagGAATTGAATTGGTACTTGGAACTCGTGTTAAGTCCGTTGATGTGAGGAGGA
EST: gi|125004978|gb|EL077247.1|EL077247
EST:     TGTTGGAGCTAATGATGAGAAGCTTACACCGAAATGGTACAAGGATCATG                         GAATTGAATTGGTACTTGGAAACTCGTGTTAAGTCCGTTGATGTGAGGAGG
genomic: TGTTGGAGCTAATGATGAGAAGCTTACACCGAAATGGTACAAGGATCATGgtaattacat ... cttttgtcagGAATTGAATTGGTACTTGGAA-CTCGTGTTAAGTCCGTTGATGTGAGGAGG
EST: gi|124994165|gb|EL066434.1|EL066434
EST:     TGTTGGAGCTAATGATGAGAAGCTTACACCGAAATGGTACAAGGATCATG                         GAATTGAATTGGTACTTGGAACTCGTGTTAAGTCCGTTGATGTG
genomic: TGTTGGAGCTAATGATGAGAAGCTTACACCGAAATGGTACAAGGATCATGgtaattacat ... cttttgtcagGAATTGAATTGGTACTTGGAACTCGTGTTAAGTCCGTTGATGTG
EST: gi|125255298|gb|EL269383.1|EL269383
EST:     AGAAGCTTACACCGAAATGGTACAAGGATCATG                         GAATTGAATTGGTACTTGGAACTCGTGTTAAGTCCGTTGATGTGAGGAGGA
genomic: AGAAGCTTACACCGAAATGGTACAAGGATCATGgtaattacat ... cttttgtcagGAATTGAATTGGTACTTGGAACTCGTGTTAAGTCCGTTGATGTGAGGAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgttttacttggtggtatgtctacgggattcttttctgataatacttttgtcagGAATTGAATTGGTACTTGGAACTCGTGTTAAGTCCGTTGATGTGAGGAGGAAGACTCTTTTATCGAGCACAGGGGAGACTATAAGTTACAAATTCTTGAT
                                  ttctgat  putative branch site (score: 3)
                                             cttttgtc  putative PPT
                                       ataatactttt  TA-rich tract