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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaagaaagtgactatcctgctaccctaatattagactgtgaaacttcagtgaaatttttgtactgtatgaattattgaaaggttgatgttgtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTCAATGTCTCTGATCTCATACCGAGACTTGGTGGGTGTCGCCTACACAGAG

Basic information

species Arabidopsis thaliana
transcript AT3G27240.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G27240.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os01g70960.2 (Oryza sativa), 3'ss of exon 3
aaagaaagtgactatcctgctaccctaatatt--agactgtgaaacttcagtgaaatttttgtactgtatgaattattgaaaggttgatgttg------tatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTCAATGTCTCTGATCTCATACCGAGACTTGGTGGGTGTCGCCTACACAGAG
        || | || |||||    || | ||     ||||     ||   | |  ||| | |  | | | |  | || |    || || ||       ||||||||| ||  | ||||| ||||||||||||   ||||| ||||| || || || ||||||||  |||| ||||||||||| ||||| ||||| ||||| ||||| 
-------atgcccatgctgctgaggtagtcttttgagctgttcttttttcat-atttttatcttttctttcacctctttatttatttattttaaaaacatatgagcagAATAAGGCGTGGCCATCAAGTTTATACACAAGTGTGTGCCTCTTGTCACTCAATGTCCTTGATTTCATACCGAGATTTGGTTGGTGTGGCCTATACAGAA

upper sequence: AT3G27240.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os05g23620.1 (Oryza sativa), 3'ss of exon 4
aaagaaagtgactatcctgctaccctaatattagactgtgaaacttcagtgaaatttttgtactgtatgaattattgaaaggttgat--gttgtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTCAATGTCTCTGATCTCATACCGAGACTTGGTGGGTGTCGCCTACACAGAG
 |  | | | | | |  |||| ||   | | |    |     ||| |      ||| |||   | ||   ||| |   |   ||||    || ||||| ||| || || ||||| ||||||||||||   ||||| ||||| || |||||||| |||||  | || || |||||||| ||||| ||||| |||||||| || 
-atcacaat-attcttttgctcccaagaaaatccttttaaccactactaccctattcttgctgtttactcattgtcttatatttgaacacttctatgatcagTATTCGGCGTGGACATCAAGTTTATACACAAGTGTGTGCCTCTTGCCATTCCATGTCATTAATTTCGTACCGAGATTTGGTTGGTGTGGCCTACACTGAA

upper sequence: AT3G27240.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA19G22530.2 (Glycine max), 3'ss of exon 3
aaagaaagtgactatcctgctaccctaatattagactgtg---aaacttcagtgaaatttttgtactgtatgaattattgaaa--ggttgatgttgtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTCAATGTCTCTGATCTCATACCGAGACTTGGTGGGTGTCGCCTACACAGAG
          |  ||   |  |   |||| ||    | |     ||    |   || | ||| ||||   |||  | ||  |      |||| ||| ||||||||||| |||||||| ||||||||||||||  |||||||||| || || ||||| |||||| |||| |||||||| || ||||| ||||| || || ||||| 
-----ccaccatcatatggtcaaattaattttgttttttacatgaatgctatataactatttatactaattgaggtcttacagttaactgattttgaatgagcagGATTCGTCGTGGTCATCAAGTTTATCAAGAAGTCTGTGCTTCTTGTCATTCTATGTCTTTGATATCATACCGTGATTTGGTTGGTGTTGCTTATACAGAA

upper sequence: AT3G27240.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA05G07020.1 (Glycine max), 3'ss of exon 3
aaagaaagtgactatcctgctaccctaatattagactgtgaaacttcagtgaaatt-tttgtactgtatgaattattgaaa--ggttgatgttgtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTCAATGTCTCTGATCTCATACCGAGACTTGGTGGGTGTCGCCTACACAGAG
     |      |||          |  | ||    |     | | |  |  || | ||| ||||   |||  | ||  |        || ||| || |||||||| |||||||| ||||||||||||||  |||||||||| || || ||||| |||||| |||| |||||||| || ||||| ||||| || || ||||| 
---ccaccctcatatttcaaattaattgtttttttttacatgaatgctatataactatttatactaattgaggtcttacagttaaccaattttgaataagcagGATTCGTCGTGGTCATCAAGTTTATCAAGAAGTCTGTGCTTCTTGTCATTCTATGTCTTTGATATCATACCGTGATTTGGTTGGTGTTGCTTATACAGAA

upper sequence: AT3G27240.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA16G06700.1 (Glycine max), 3'ss of exon 4
aaagaaagtgactatcctgctaccctaatattagactgtgaaacttca-gtgaaatttttgtactgtatgaattattgaaa-----ggttgatgttgtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTCAATGTCTCTGATCTCATACCGAGACTTGGTGGGTGTCGCCTACACAGAG
      | |   | | ||||| |  | || |         | | |||| || || ||| | |    ||| |||| || |         || || ||  ||| ||||||| |||||||| ||||||||||||    |||||||||| || |||||||| |||||| |||| || || || || ||||| ||||| || || ||||| 
-----gaatacatgttctgctgctatcatgtatttaaaccatatttcacgttaagtttatat-taatatcaattcttaatgctttcaattaatttttcatgggcagGATTCGTCGTGGTCATCAAGTTTATACAGAAGTCTGTGCTTCCTGCCATTCTATGTCTTTGATATCGTATCGTGATTTGGTTGGTGTTGCTTATACAGAA

upper sequence: AT3G27240.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA19G24620.2 (Glycine max), 3'ss of exon 3
aaagaaagtgactatcctgctaccctaatattagactgtgaaacttcagtgaaatttttgtactgtatgaattat-tgaaaggttgatgttgtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTCAATGTCTCTGATCTCATACCGAGACTTGGTGGGTGTCGCCTACACAGAG
    |||     | ||    ||   | |||||||  | |  || || |    ||||   |   |  ||   | ||        || || ||  ||| ||||||| |||||||| ||||||||||||    |||||||||| || |||||||| |||||| |||| || || || || ||||| ||||| || || ||||| 
-tttaaaccatatttcacattaaggttatattagtatctataatttaataataattaacgccttaaattcttaatgctttcaattaatttttcatgggcagGATTCGTCGTGGTCATCAAGTTTATACAGAAGTCTGTGCTTCCTGCCATTCTATGTCTTTGATATCGTATCGTGATTTGGTTGGTGTTGCTTATACAGAA

upper sequence: AT3G27240.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv14s0171g00330.t01 (Vitis vinifera), 3'ss of exon 3
------aaagaaagtgactatcctgctaccctaatattagactgtgaaacttcagtgaaatttttgtactgtatgaattattgaaaggttgatgttgtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTCAATGTCTCTGATCTCATACCGAGACTTGGTGGGTGTCGCCTACACAGAG
        |   || | | | | |  |    || | || |    | || ||| |    ||||| |  | || |   | | ||   | |   || || | |||||||||| |||||||| || || ||||| || |||||||||||||| |||||||| ||||| || || ||||| || || || |||||||| || || ||||| 
tttgatctatctagggccaaactttttgttata-tcttgggtcattaatcttgatatcaatttct-caatgca---actttttttatgccaat-ttatttgagcagGATTCGTCGTGGTCACCAGGTTTACCAACAAGTCTGTGCATCCTGCCATTCTATGTCACTAATTTCATATCGTGATTTAGTGGGTGTGGCATATACAGAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86050727|gb|DR346482.1|DR346482
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAA
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAA
EST: gi|86050742|gb|DR346497.1|DR346497
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050712|gb|DR346467.1|DR346467
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050687|gb|DR346442.1|DR346442
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050745|gb|DR346500.1|DR346500
EST:     GAGTASCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050697|gb|DR346452.1|DR346452
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCWAGTTTATCAGCAAGTCTGTGCATCWTGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050693|gb|DR346448.1|DR346448
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050685|gb|DR346440.1|DR346440
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050706|gb|DR346461.1|DR346461
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050710|gb|DR346465.1|DR346465
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050720|gb|DR346475.1|DR346475
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050733|gb|DR346488.1|DR346488
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGSTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATC
EST: gi|86050702|gb|DR346457.1|DR346457
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050718|gb|DR346473.1|DR346473
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCSGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050689|gb|DR346444.1|DR346444
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050698|gb|DR346453.1|DR346453
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050738|gb|DR346493.1|DR346493
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050740|gb|DR346495.1|DR346495
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         TATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050694|gb|DR346449.1|DR346449
EST:     GAGTACCCTTGGCNTNATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGCCGTGGGCATCAAGTTTATCAGCAAGTCTGTGGATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050734|gb|DR346489.1|DR346489
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         TATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050724|gb|DR346479.1|DR346479
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050713|gb|DR346468.1|DR346468
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050707|gb|DR346462.1|DR346462
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050747|gb|DR346502.1|DR346502
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050683|gb|DR346438.1|DR346438
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050737|gb|DR346492.1|DR346492
EST:     GAGTACCTTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050730|gb|DR346485.1|DR346485
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050711|gb|DR346466.1|DR346466
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050722|gb|DR346477.1|DR346477
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTTATCAGCAAGTCTGTGCATCATGCCAAT
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTT-ATCAGCAAGTCTGTGCATCATGCCATT
EST: gi|86050688|gb|DR346443.1|DR346443
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTKATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050736|gb|DR346491.1|DR346491
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTTGTGCATCATGCCATT
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCT-GTGCATCATGCCATT
EST: gi|86050739|gb|DR346494.1|DR346494
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050741|gb|DR346496.1|DR346496
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050721|gb|DR346476.1|DR346476
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050728|gb|DR346483.1|DR346483
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050719|gb|DR346474.1|DR346474
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050705|gb|DR346460.1|DR346460
EST:     GAGTACCCTTGGCCTCATTATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050684|gb|DR346439.1|DR346439
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050746|gb|DR346501.1|DR346501
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050744|gb|DR346499.1|DR346499
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050701|gb|DR346456.1|DR346456
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050699|gb|DR346454.1|DR346454
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATSAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050686|gb|DR346441.1|DR346441
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050700|gb|DR346455.1|DR346455
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050717|gb|DR346472.1|DR346472
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050743|gb|DR346498.1|DR346498
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050723|gb|DR346478.1|DR346478
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050735|gb|DR346490.1|DR346490
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCAT
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCAT
EST: gi|86050716|gb|DR346471.1|DR346471
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
EST: gi|86050714|gb|DR346469.1|DR346469
EST:     GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTC                         GATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC
genomic: GAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCgtgagtattg ... gtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagtgaaatttttgtactgtatgaattattgaaaggttgatgttgtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTCAATGTCTCTGATCTCATACCGAGACTTGGTGGGTGTCGCCTACACAGAG
                                   ggttgat  putative branch site (score: 5)
                    tatgaattattgaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaagaaagtgactatcctgctaccctaatattagactgtgaaacttcagtgaaatttttgtactgtatgaattattgaaaggttgatgttgtatgagcagGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTCAATGTCTCTGATCTCATACCGAGACTTGGTGGGTGTCGCCTACACAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
aaagaaa
- - - - - - - - - - -accctaa
- - - - - - - - - - - - - - - - - - - tgaaact