1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtttgttctcgtgctttttttttgtcataacaatggttttgatgctaccatttactgaaaatttgatgttcgaattattccgtgaatgattccttgtttagGCAACAACTTTTGGAGGTACTAATATTGATGCTACTGCTTGGGAAGACAAAAAGTGCAAAGGAGAGTCAAGGTTTCCGGCTCAG
species | Arabidopsis thaliana |
transcript | AT3G27090.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTCTGTTTCTTTACAACTACACCACTCACCAGCTTCATGGTATCTTTGAG GCTAACAACTTTTGGAGEST: gi|125237597|gb|EL251682.1|EL251682
genomic: CTCTGTTTCTTTACAACTACACCACTCACCAGCTTCATGGTATCTTTGAGgtttgttctc ... ccttgtttagGC-AACAACTTTTGGAG
EST: CTTCATGGTATCTTTGAG GCAACAACTTTTGGAGGTACTAATATTGATGCTACTGCTTGGGAAGACAAA
genomic: CTTCATGGTATCTTTGAGgtttgttctc ... ccttgtttagGCAACAACTTTTGGAGGTACTAATATTGATGCTACTGCTTGGGAAGACAAA
accatttactgaaaatttgatgttcgaattattccgtgaatgattccttgtttagGCAACAACTTTTGGAGGTACTAATATTGATGCTACTGCTTGGGAAGACAAAAAGTGCAAAGGAGAGTCAAGGTTTCCGGCTCAG
atttgat putative branch site (score: 5)
ttccttgttt putative PPT
aaaatttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgttctcgtgctttttttttgtcataacaatggttttgatgctaccatttactgaaaatttgatgttcgaattattccgtgaatgattccttgtttagGCAACAACTTTTGGAGGTACTAATATTGATGCTACTGCTTGGGAAGACAAAAAGTGCAAAGGAGAGTCAAGGTTTCCGGCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA