Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggactatattctgtataacttttgcttagactggaaagaagaaaacaaagattcatgtttgagagattactctgcttctttttcacagGTTGAGGTTAGATTAAGGGAAGGAAGAGCAGTGAACATTCATATGTTCTGTGGTCGTAGACCGGGTCTGTTGCTCGCTACCATGAAAGCTTTGGATAATC

Basic information

species Arabidopsis thaliana
transcript AT3G26744.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G26744.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA16G05390.1 (Glycine max), 3'ss of exon 2
gtaaggactatattctgtataacttttgcttagactggaaagaagaaaacaaa-gattca------tgtttgaga--gattactctgcttct--ttttcacagGTTGAGGTTAGATTAAGGGAAGGAAGAGCAGTGAACATTCATATGTTCTGTGGTCGTAGACCGGGTCTGTTGCTCGCTACCATGAAAGCTTTGGATAATC
      |||| |||   |   | ||||   | ||| | |   ||    |     ||||        ||||| | |  || |    || ||||  | || | |||||||||||||| |||||||||| ||||| || |||||||||||||||||    ||  |||| ||||| |||||  |||||||||  ||||||||||| |
---ccaactagattgatttatatttttatgttgacagaatttaattgcattggtgatttgctaaattgttttaaattgactttagtgtttctgatatttatagGTTGAGGTTAGAGTAAGGGAAGGGAGAGCTGTCAACATTCATATGTTCTGCACCCGCCGACCAGGTCTTTTGCTTTCTACCATGAGGGCTTTGGATAACC

upper sequence: AT3G26744.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA19G27480.2 (Glycine max), 3'ss of exon 2
gtaaggactatattctgtataacttttgcttagactggaaagaagaaaacaaagattca------tgtttgaga--gattactctgcttct--ttttcacagGTTGAGGTTAGATTAAGGGAAGGAAGAGCAGTGAACATTCATATGTTCTGTGGTCGTAGACCGGGTCTGTTGCTCGCTACCATGAAAGCTTTGGATAATC
 ||  ||||| |||   ||||  ||||   | ||| | |   ||    |    ||||        ||||| | |  || |    || ||||    || | |||||||||||||| |||||||||| ||| | || |||||||||||||||||    ||  |||| ||||| |||||  |||||||||| ||||||||||| |
ttaccgactagattg-atata-tttttatgttgacagaatttaattgcatgttgatttgctaaattgttttaaattgactttagtgtttctgacatttatagGTTGAGGTTAGAGTAAGGGAAGGGAGAACTGTCAACATTCATATGTTCTGCACCCGCCGACCAGGTCTTTTGCTTTCTACCATGAAGGCTTTGGATAACC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124765675|gb|EH855805.1|EH855805
EST:     TCCCTCTTCTTTACCAAGTCCTAAAGGCCAGCAAGCTAGA                         GTTGAGGTTAGATTAAGGGAAGGAAGAGCAGTGAACATTCATATGTTCTGT
genomic: TCCCTCTTCTTTACCAAGTCCTAAAGGCCAGCAAGCTAGAgtaaggacta ... tttttcacagGTTGAGGTTAGATTAAGGGAAGGAAGAGCAGTGAACATTCATATGTTCTGT
EST: gi|164049101|gb|EL991415.1|EL991415
EST:     CCAAGTCCTAAAGGCCAGCAAGCTAGA                         GTTGAGGTTAGATTAAGGGAAGGAAGAGCAGTGAACATTCATATGTTCTGT
genomic: CCAAGTCCTAAAGGCCAGCAAGCTAGAgtaaggacta ... tttttcacagGTTGAGGTTAGATTAAGGGAAGGAAGAGCAGTGAACATTCATATGTTCTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaagaagaaaacaaagattcatgtttgagagattactctgcttctttttcacagGTTGAGGTTAGATTAAGGGAAGGAAGAGCAGTGAACATTCATATGTTCTGTGGTCGTAGACCGGGTCTGTTGCTCGCTACCATGAAAGCTTTGGATAATC
                                 ttactctgcttctttt  CT-rich tract
        aaaacaaa  TA-rich tract