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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacatctcggaaaacgattatgttgtgtactaagaatcctttgagagattcagtaaccaaaacatgttttgtattgcatgatctttcttgcagTTGGGTTTGAAACTTGGCATCTCGGTTTAATTGCTGGAATCGTTGTGTTTATATCGTCAAGTAGGTTCTTGCTACTTAAATCTTGGCCAGATTTTGCTGA

Basic information

species Arabidopsis thaliana
transcript AT3G26085.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124776116|gb|EH866243.1|EH866243
EST:     AAGGATTACTGGTTCCAGACTGCTCTATAGATGTACCAT                         TTGGGTTTGAAACTTGGCATCTCGGTTTAATTGCTGGAATCGTTGTGTTTA
genomic: AAGGATTACTGGTTCCAGACTGCTCTATAGATGTACCATgtaacatctc ... tttcttgcagTTGGGTTTGAAACTTGGCATCTCGGTTTAATTGCTGGAATCGTTGTGTTTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgagagattcagtaaccaaaacatgttttgtattgcatgatctttcttgcagTTGGGTTTGAAACTTGGCATCTCGGTTTAATTGCTGGAATCGTTGTGTTTATATCGTCAAGTAGGTTCTTGCTACTTAAATCTTGGCCAGATTTTGCTGA
            cagtaac  putative branch site (score: 2)
                                           tctttcttgc  putative PPT
                            ttttgtatt  TA-rich tract