1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtactattcttaacgaattgtttagatgacaaacatgtgaagtgtgtttaaggattttgatttaagggatatatctatggaatgcagGAACTTTTACTTTATCGAATCTCGGTATGTTTGGAGTGGATAGATTTGACGCTATTCTTCCGCCAGGACAG
species | Arabidopsis thaliana |
transcript | AT3G25860.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGTGGGGAAAGCTAGAAGCAAGCAACTTCAACCCCATGAATACAACTCTG GAACTTTTACTTTATCGAATCTCGGTATGTTTGGAGTGGATAEST: gi|86086933|gb|DR382692.1|DR382692
genomic: GGTGGGGAAAGCTAGAAGCAAGCAACTTCAACCCCATGAATACAACTCTGgtactattct ... tggaatgcagGAACTTTTACTTTATCGAATCTCGGTATGTTTGGAGTGGATA
EST: GGTGGGGAAAGCTAGAAGCAAGCAACTTCAACCCCATGAATACAACTCTG GAACTTTTACTTTATCGAATCTCGGTATGTTTGGAGTGGATAGATTTGACG
genomic: GGTGGGGAAAGCTAGAAGCAAGCAACTTCAACCCCATGAATACAACTCTGgtactattct ... tggaatgcagGAACTTTTACTTTATCGAATCTCGGTATGTTTGGAGTGGATAGATTTGACG
acatgtgaagtgtgtttaaggattttgatttaagggatatatctatggaatgcagGAACTTTTACTTTATCGAATCTCGGTATGTTTGGAGTGGATAGATTTGACGCTATTCTTCCGCCAGGACAG
ttttgat putative branch site (score: 4)
attttgatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactattcttaacgaattgtttagatgacaaacatgtgaagtgtgtttaaggattttgatttaagggatatatctatggaatgcagGAACTTTTACTTTATCGAATCTCGGTATGTTTGGAGTGGATAGATTTGACGCTATTCTTCCGCCAGGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA