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gtgattatgtctgtaggcttttatgctgatgatctacatttaaaagaaatgcttaatctttgtactttttcactgagcagGATAAGTCTTGGCGTGTGCGCTATATGGTTGCAAATCAACTCTACGAGCTTTGTGAAGCCGTGGGACCTGAGCCTACTAG
species | Arabidopsis thaliana |
transcript | AT3G25800.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTCAGGATTGTGTCCAACACATTCTTCCCGTGATTGTTAATTTCTCGCAG GATAAGTCTTGGCGTGTGCGCTATATGGTTGCAAATCAACTCTACGAGCTTEST: gi|125007184|gb|EL079453.1|EL079453
genomic: CTCAGGATTGTGTCCAACACATTCTTCCCGTGATTGTTAATTTCTCGCAGgtgattatgt ... cactgagcagGATAAGTCTTGGCGTGTGCGCTATATGGTTGCAAATCAACTCTACGAGCTT
EST: CTCAGGATTGTGTCCAACACATTCTTCCCGTGATTGTTAATTTCTCGCAG GATAAGTCTTGGCGTGTGCGEST: gi|86040358|gb|DR336113.1|DR336113
genomic: CTCAGGATTGTGTCCAACACATTCTTCCCGTGATTGTTAATTTCTCGCAGgtgattatgt ... cactgagcagGATAAGTCTTGGCGTGTGCG
EST: CTCAGGATTGTGTCCAACACATTCTTCCCGTGATTGTTAATTTCTCGCAG GATAAGTCTTGGCGTGTGCGCTATATGGTTGCAAATCAACTCTACGAGCTTEST: gi|86040356|gb|DR336111.1|DR336111
genomic: CTCAGGATTGTGTCCAACACATTCTTCCCGTGATTGTTAATTTCTCGCAGgtgattatgt ... cactgagcagGATAAGTCTTGGCGTGTGCGCTATATGGTTGCAAATCAACTCTACGAGCTT
EST: CTCAGGATTGTGTCCAACACATTCTTCCCGTGATTGTTAATTTCTCGCAG GATAAGTCTTGGCGTGTGCGCTATATGGTTGCAAATCAACTCTACGAGCTTEST: gi|125277273|gb|EL291358.1|EL291358
genomic: CTCAGGATTGTGTCCAACACATTCTTCCCGTGATTGTTAATTTCTCGCAGgtgattatgt ... cactgagcagGATAAGTCTTGGCGTGTGCGCTATATGGTTGCAAATCAACTCTACGAGCTT
EST: CTCAGGATTGTGTCCAACACATTCTTCCCGTGATTGTTAATTTCTCGCAG GATAAGTCTTGGCGTGTGCGCTATATGGTTGCAAATCAACTCTACEST: gi|164016870|gb|ES116636.1|ES116636
genomic: CTCAGGATTGTGTCCAACACATTCTTCCCGTGATTGTTAATTTCTCGCAGgtgattatgt ... cactgagcagGATAAGTCTTGGCGTGTGCGCTATATGGTTGCAAATCAACTCTAC
EST: CTCAGGATTGTGTCCAACACATTCTTCCCGTGATTGTTAATTTCTCGCAG GATAAGTCTTGGCGTGTGCGCTATATGGTTGCAAATC
genomic: CTCAGGATTGTGTCCAACACATTCTTCCCGTGATTGTTAATTTCTCGCAGgtgattatgt ... cactgagcagGATAAGTCTTGGCGTGTGCGCTATATGGTTGCAAATC
ctgatgatctacatttaaaagaaatgcttaatctttgtactttttcactgagcagGATAAGTCTTGGCGTGTGCGCTATATGGTTGCAAATCAACTCTACGAGCTTTGTGAAGCCGTGGGACCTGAGCCTACTAG
tctttgtactttttc CT-rich tract
tacatttaaaagaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgattatgtctgtaggcttttatgctgatgatctacatttaaaagaaatgcttaatctttgtactttttcactgagcagGATAAGTCTTGGCGTGTGCGCTATATGGTTGCAAATCAACTCTACGAGCTTTGTGAAGCCGTGGGACCTGAGCCTACTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC