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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtttcttggttttaagttaaaacatatatatcagtagtcatatctttttgttagggctcatgaagtttaattaattcgtaatgacctttttgttcactaaattttgaagTAGCTACGCCGAAACAGATAAGAGATATAATGAAGGTTGATGGGTTAACAAATGATGAAGTCAAAAGTCATTTACAG

Basic information

species Arabidopsis thaliana
transcript AT3G25790.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G25790.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv01s0011g03110.t01 (Vitis vinifera), 3'ss of exon 3
--gtgcgttt-cttggttttaagttaaaacatatata---tcagtagtcatatctttttgttagggctcatgaagtttaattaattcgtaatgacctttttgttcactaaattttgaagTAGCTACGCCGAAACAGATAAGAGATATAATGAAGGTTGATGGGTTAACAAATGATGAAGTCAAAAGTCATTTACAG
  |||  | | |||||    || |   |   ||  ||   |   |   ||||  ||      |      ||  | || |||||| |   | |||  |||||   |  |   |  || ||| ||||| || || ||||| || ||  | ||||||||||||||| | || ||||||||||||||||| |||||||||
gtgtgtatatacttggagacaattgtgattctagttaaatttttttaacataatttccctcaaaatgggattgaattgaattaaatttgattgattttttt-ccctttttttcctgcagTTGCTACCCCAAAGCAGATCAGGGAACTGATGAAGGTTGATGGGCTTACTAATGATGAAGTCAAAAGCCATTTACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86085534|gb|DR381293.1|DR381293
EST:     GTTACACAGACGCTTCTTGAACGCTCTTAAACAACTTGGTGGCCCTCATG                         TA-STACGCCGAWACAGATAAGAGATATAATGAAGGTTGATGGGTTAMCAA
genomic: GTTACACAGACGCTTCTTGAACGCTCTTAAACAACTTGGTGGCCCTCATGgtgcgtttct ... aattttgaagTAGCTACGCCGAAACAGATAAGAGATATAATGAAGGTTGATGGGTTAACAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggctcatgaagtttaattaattcgtaatgacctttttgttcactaaattttgaagTAGCTACGCCGAAACAGATAAGAGATATAATGAAGGTTGATGGGTTAACAAATGATGAAGTCAAAAGTCATTTACAG
                                        cactaaa  putative branch site (score: 2)
     atgaagtttaattaat  TA-rich tract