1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtgagtttggtttgattttcacaaattctttattctcttgaagcttctagttgctttgctcatatagatttcttcaacctgtttttagATATACTCACCTAAGTTGGATTCTCCACCTCCTCGATGGGTCCACTTTGCACACGGCTTACTTCTGTTTTTATATCAG
species | Arabidopsis thaliana |
transcript | AT3G25585.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGTTTCTTCTCACATCTGCTCTCTTAGGCTAT ATATACTCACCTAAGTTAGATTCTCCACCTCCTCGATGGGTCCACTTTGCAEST: gi|124888887|gb|EH967789.1|EH967789
genomic: ATGTTTCTTCTCACATCTGCTCTCTTAGGCTATgtgagtttgg ... ctgtttttagATATACTCACCTAAGTTGGATTCTCCACCTCCTCGATGGGTCCACTTTGCA
EST: TGGGGTTCATGTTTCTTCTCACATCTGCTCTCTTAGGCTAT ATATACTCACCTAAGTTGGATTCTCCACCTCCTCGATGGGTCCACTTTGCAEST: gi|116466773|gb|EG509365.1|EG509365
genomic: TGGGGTTCATGTTTCTTCTCACATCTGCTCTCTTAGGCTATgtgagtttgg ... ctgtttttagATATACTCACCTAAGTTGGATTCTCCACCTCCTCGATGGGTCCACTTTGCA
EST: TAACACTTATGGGGTTCATGTTTCTTCTCACATCTGCTCTCTTAGGCTAT ATATACTCACCTAAGTTGGATTCTCCACCTCCTCGATGGGTCCACTTTGCA
genomic: TAACACTTATGGGGTTCATGTTTCTTCTCACATCTGCTCTCTTAGGCTATgtgagtttgg ... ctgtttttagATATACTCACCTAAGTTGGATTCTCCACCTCCTCGATGGGTCCACTTTGCA
tctcttgaagcttctagttgctttgctcatatagatttcttcaacctgtttttagATATACTCACCTAAGTTGGATTCTCCACCTCCTCGATGGGTCCACTTTGCACACGGCTTACTTCTGTTTTTATATCAG
cctgttttt CT-rich tract
atatagattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtttggtttgattttcacaaattctttattctcttgaagcttctagttgctttgctcatatagatttcttcaacctgtttttagATATACTCACCTAAGTTGGATTCTCCACCTCCTCGATGGGTCCACTTTGCACACGGCTTACTTCTGTTTTTATATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC